Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | HK402_RS01570 | Genome accession | NZ_CP053075 |
| Coordinates | 340452..340877 (+) | Length | 141 a.a. |
| NCBI ID | WP_145398816.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SA01 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 329513..370257 | 340452..340877 | within | 0 |
Gene organization within MGE regions
Location: 329513..370257
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HK402_RS01445 (HK402_01450) | - | 329513..330718 (-) | 1206 | WP_000264187.1 | tyrosine-type recombinase/integrase | - |
| HK402_RS01450 (HK402_01455) | - | 330828..331442 (+) | 615 | WP_000191466.1 | hypothetical protein | - |
| HK402_RS01455 (HK402_01460) | - | 331439..331585 (-) | 147 | WP_001795334.1 | hypothetical protein | - |
| HK402_RS01460 (HK402_01465) | - | 331622..331804 (-) | 183 | WP_000705240.1 | hypothetical protein | - |
| HK402_RS01465 (HK402_01470) | - | 331874..332644 (-) | 771 | WP_033857101.1 | S24 family peptidase | - |
| HK402_RS01470 (HK402_01475) | - | 332804..333025 (+) | 222 | WP_000338187.1 | DUF739 family protein | - |
| HK402_RS01475 (HK402_01480) | - | 333049..333495 (+) | 447 | WP_031900836.1 | hypothetical protein | - |
| HK402_RS01480 (HK402_01485) | - | 333512..334261 (+) | 750 | WP_033857102.1 | phage antirepressor KilAC domain-containing protein | - |
| HK402_RS01485 (HK402_01490) | - | 334274..334534 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| HK402_RS14765 | - | 334558..334713 (-) | 156 | Protein_299 | hypothetical protein | - |
| HK402_RS01495 (HK402_01500) | - | 334768..334962 (+) | 195 | WP_001148859.1 | hypothetical protein | - |
| HK402_RS01500 (HK402_01505) | - | 334957..335313 (-) | 357 | WP_000768245.1 | DUF2513 domain-containing protein | - |
| HK402_RS01505 (HK402_01510) | - | 335363..335554 (+) | 192 | WP_000389906.1 | hypothetical protein | - |
| HK402_RS01510 (HK402_01515) | - | 335556..335783 (-) | 228 | WP_031900921.1 | hypothetical protein | - |
| HK402_RS01515 (HK402_01520) | - | 335843..336619 (+) | 777 | WP_001148541.1 | Rha family transcriptional regulator | - |
| HK402_RS01520 (HK402_01525) | - | 336633..336848 (+) | 216 | WP_031900920.1 | hypothetical protein | - |
| HK402_RS01525 (HK402_01530) | - | 336901..337041 (+) | 141 | WP_000939500.1 | hypothetical protein | - |
| HK402_RS01530 (HK402_01535) | - | 337056..337688 (-) | 633 | WP_001814660.1 | hypothetical protein | - |
| HK402_RS14770 | - | 338060..338158 (+) | 99 | Protein_308 | hypothetical protein | - |
| HK402_RS01540 (HK402_01545) | - | 338308..338571 (+) | 264 | WP_001124198.1 | helix-turn-helix domain-containing protein | - |
| HK402_RS01545 (HK402_01550) | - | 338583..338744 (+) | 162 | WP_031900930.1 | DUF1270 family protein | - |
| HK402_RS01550 (HK402_01555) | - | 338838..339098 (+) | 261 | WP_000291075.1 | DUF1108 family protein | - |
| HK402_RS01555 (HK402_01560) | - | 339106..339342 (+) | 237 | WP_031900924.1 | hypothetical protein | - |
| HK402_RS01560 (HK402_01565) | - | 339335..339814 (+) | 480 | WP_000002513.1 | siphovirus Gp157 family protein | - |
| HK402_RS01565 (HK402_01570) | - | 339814..340452 (+) | 639 | WP_145398813.1 | ERF family protein | - |
| HK402_RS01570 (HK402_01575) | ssbA | 340452..340877 (+) | 426 | WP_145398816.1 | single-stranded DNA-binding protein | Machinery gene |
| HK402_RS01575 (HK402_01580) | - | 340891..341565 (+) | 675 | WP_042743981.1 | putative HNHc nuclease | - |
| HK402_RS01580 (HK402_01585) | - | 341675..342334 (-) | 660 | WP_016028252.1 | hypothetical protein | - |
| HK402_RS01585 (HK402_01590) | - | 342380..343150 (+) | 771 | WP_015967235.1 | conserved phage C-terminal domain-containing protein | - |
| HK402_RS01590 (HK402_01595) | - | 343160..343933 (+) | 774 | WP_000803028.1 | ATP-binding protein | - |
| HK402_RS01595 (HK402_01600) | - | 343927..344085 (+) | 159 | WP_000256589.1 | hypothetical protein | - |
| HK402_RS01600 (HK402_01605) | - | 344098..344319 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| HK402_RS01605 (HK402_01610) | - | 344329..344736 (+) | 408 | Protein_322 | RusA family crossover junction endodeoxyribonuclease | - |
| HK402_RS01610 (HK402_01615) | - | 344736..344921 (+) | 186 | WP_001187267.1 | DUF3113 family protein | - |
| HK402_RS01615 (HK402_01620) | - | 344922..345281 (+) | 360 | WP_000117793.1 | SA1788 family PVL leukocidin-associated protein | - |
| HK402_RS01620 (HK402_01625) | - | 345282..345530 (+) | 249 | WP_114579870.1 | phi PVL orf 51-like protein | - |
| HK402_RS01625 (HK402_01630) | - | 345545..345793 (+) | 249 | WP_001065055.1 | DUF1024 family protein | - |
| HK402_RS01630 (HK402_01635) | - | 345786..346319 (+) | 534 | WP_000185661.1 | dUTP pyrophosphatase | - |
| HK402_RS01635 (HK402_01640) | - | 346356..346601 (+) | 246 | WP_001282074.1 | hypothetical protein | - |
| HK402_RS01640 (HK402_01645) | - | 346598..346804 (+) | 207 | WP_000195771.1 | DUF1381 domain-containing protein | - |
| HK402_RS01645 (HK402_01650) | - | 346801..347184 (+) | 384 | WP_000592223.1 | hypothetical protein | - |
| HK402_RS01650 (HK402_01655) | - | 347184..347333 (+) | 150 | WP_147091838.1 | transcriptional regulator | - |
| HK402_RS01655 (HK402_01660) | - | 347333..347533 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| HK402_RS01660 (HK402_01665) | - | 347556..348017 (+) | 462 | WP_000282753.1 | hypothetical protein | - |
| HK402_RS01665 (HK402_01670) | - | 348132..348584 (+) | 453 | WP_000406188.1 | nucleoside triphosphate pyrophosphohydrolase family protein | - |
| HK402_RS01670 (HK402_01675) | - | 348600..348944 (+) | 345 | WP_000817289.1 | HNH endonuclease | - |
| HK402_RS01675 (HK402_01680) | - | 349072..349542 (+) | 471 | WP_000919030.1 | phage terminase small subunit P27 family | - |
| HK402_RS01680 (HK402_01685) | - | 349542..351236 (+) | 1695 | WP_033857156.1 | phage terminase family protein | - |
| HK402_RS01685 (HK402_01690) | - | 351250..351453 (+) | 204 | WP_031916527.1 | hypothetical protein | - |
| HK402_RS01690 (HK402_01695) | - | 351456..352730 (+) | 1275 | WP_031916528.1 | phage portal protein | - |
| HK402_RS01695 (HK402_01700) | - | 352705..353289 (+) | 585 | WP_031916529.1 | HK97 family phage prohead protease | - |
| HK402_RS01700 (HK402_01705) | - | 353377..354612 (+) | 1236 | WP_000849953.1 | phage major capsid protein | - |
| HK402_RS01705 (HK402_01710) | - | 354649..354807 (+) | 159 | WP_001240639.1 | hypothetical protein | - |
| HK402_RS01710 (HK402_01715) | - | 354816..355148 (+) | 333 | WP_031916531.1 | head-tail connector protein | - |
| HK402_RS01715 (HK402_01720) | - | 355138..355470 (+) | 333 | WP_031916532.1 | head-tail adaptor protein | - |
| HK402_RS01720 (HK402_01725) | - | 355470..355847 (+) | 378 | WP_000501001.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| HK402_RS01725 (HK402_01730) | - | 355844..356233 (+) | 390 | WP_031916533.1 | hypothetical protein | - |
| HK402_RS01730 (HK402_01735) | - | 356226..357179 (+) | 954 | WP_031916534.1 | major tail protein | - |
| HK402_RS01735 (HK402_01740) | - | 357244..357690 (+) | 447 | WP_031916535.1 | hypothetical protein | - |
| HK402_RS01740 (HK402_01745) | - | 357750..357872 (+) | 123 | WP_000571956.1 | hypothetical protein | - |
| HK402_RS01745 (HK402_01750) | - | 357928..362577 (+) | 4650 | WP_031916536.1 | phage tail tape measure protein | - |
| HK402_RS01750 (HK402_01755) | - | 362577..364067 (+) | 1491 | WP_031916537.1 | phage tail domain-containing protein | - |
| HK402_RS01755 (HK402_01760) | - | 364083..367868 (+) | 3786 | WP_031910186.1 | phage tail spike protein | - |
| HK402_RS01760 (HK402_01765) | - | 367858..368010 (+) | 153 | WP_001153681.1 | hypothetical protein | - |
| HK402_RS01765 (HK402_01770) | - | 368057..368344 (+) | 288 | WP_001040261.1 | hypothetical protein | - |
| HK402_RS01770 (HK402_01775) | - | 368402..368698 (+) | 297 | WP_000539688.1 | DUF2951 domain-containing protein | - |
| HK402_RS01775 (HK402_01780) | pepG1 | 368890..369024 (+) | 135 | WP_000226108.1 | type I toxin-antitoxin system toxin PepG1 | - |
| HK402_RS01780 (HK402_01785) | - | 369077..369184 (-) | 108 | WP_001791821.1 | hypothetical protein | - |
| HK402_RS01785 (HK402_01790) | - | 369236..369490 (+) | 255 | WP_000611512.1 | phage holin | - |
| HK402_RS01790 (HK402_01795) | - | 369502..370257 (+) | 756 | WP_000861038.1 | CHAP domain-containing protein | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15973.64 Da Isoelectric Point: 6.3912
>NTDB_id=442811 HK402_RS01570 WP_145398816.1 340452..340877(+) (ssbA) [Staphylococcus aureus strain SA01]
MLNRVVLVGRLTKDPELRSTPNGVSVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
NYENKDGQRVFVTEVVADSVQFLEPKNNNQQQKNNYQQQRQTQTGNNPFDNTEEDFSDLPF
MLNRVVLVGRLTKDPELRSTPNGVSVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
NYENKDGQRVFVTEVVADSVQFLEPKNNNQQQKNNYQQQRQTQTGNNPFDNTEEDFSDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=442811 HK402_RS01570 WP_145398816.1 340452..340877(+) (ssbA) [Staphylococcus aureus strain SA01]
ATGTTAAACAGAGTAGTTTTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGTGTAAGTGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGT
AACTACGAAAACAAAGACGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGCGTACAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAAAAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCGTTTGACAATACTGAAG
AAGATTTTTCAGACCTCCCGTTCTGA
ATGTTAAACAGAGTAGTTTTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCACGCCAAATGGTGTAAGTGTAGG
GACATTCACATTAGCAGTAAACAGAACATTTACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAAAAACAAGCTGAAAACGTTAAAAACTACCTTTCTAAAGGATCGTTGGCAGGTGTAGACGGACGACTACAAACACGT
AACTACGAAAACAAAGACGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGCGTACAATTCTTAGAACCGAAGAA
TAACAACCAACAACAAAAAAACAATTATCAACAACAAAGACAAACTCAAACTGGTAATAATCCGTTTGACAATACTGAAG
AAGATTTTTCAGACCTCCCGTTCTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
83.178 |
75.887 |
0.631 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
56.579 |
100 |
0.61 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
59.434 |
75.177 |
0.447 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
50.435 |
81.56 |
0.411 |
| ssbA | Streptococcus mutans UA159 |
49.565 |
81.56 |
0.404 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
47.458 |
83.688 |
0.397 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
47.458 |
83.688 |
0.397 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
46.61 |
83.688 |
0.39 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
46.61 |
83.688 |
0.39 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
46.61 |
83.688 |
0.39 |
| ssbB/cilA | Streptococcus mitis SK321 |
46.61 |
83.688 |
0.39 |