Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   DSM104440_RS19335 Genome accession   NZ_CP053073
Coordinates   2869273..2870643 (-) Length   456 a.a.
NCBI ID   WP_212758083.1    Uniprot ID   A0A6M4HBD3
Organism   Usitatibacter palustris strain Swamp67     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2864273..2875643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DSM104440_RS13960 (DSM104440_02767) - 2864334..2867435 (-) 3102 WP_171163653.1 multidrug efflux RND transporter permease subunit -
  DSM104440_RS13965 (DSM104440_02768) - 2867449..2868669 (-) 1221 WP_171163656.1 efflux RND transporter periplasmic adaptor subunit -
  DSM104440_RS13970 (DSM104440_02769) ampD 2868720..2869268 (-) 549 WP_212758350.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  DSM104440_RS19335 (DSM104440_02770) pilR 2869273..2870643 (-) 1371 WP_212758083.1 sigma-54 dependent transcriptional regulator Regulator
  DSM104440_RS13975 (DSM104440_02771) - 2870643..2872274 (-) 1632 WP_171163660.1 ATP-binding protein -
  DSM104440_RS13980 (DSM104440_02772) - 2872271..2872492 (-) 222 WP_171163662.1 PP0621 family protein -
  DSM104440_RS13985 (DSM104440_02773) - 2872780..2874366 (-) 1587 WP_171163664.1 ATP-binding protein -
  DSM104440_RS13990 (DSM104440_02774) pdsR 2874377..2875069 (-) 693 WP_171163666.1 proteobacterial dedicated sortase system response regulator -
  DSM104440_RS13995 (DSM104440_02775) - 2875238..2875594 (+) 357 WP_171163668.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 50099.56 Da        Isoelectric Point: 6.0419

>NTDB_id=442747 DSM104440_RS19335 WP_212758083.1 2869273..2870643(-) (pilR) [Usitatibacter palustris strain Swamp67]
MNRKSVLIVDDEADIRELLVLTLTRMGVDADTAGTVQEAQEALKHRPYDLCLTDMRLPDGDGLAVLNHISEHYGNTPVAV
ITAYGSTDNAVAALKAGAFDYLAKPIKVEQLRPLVMSALKLPKPVQARRAAIGETAQPGAPRLLGESPAIVRAREMISKL
SRSQAPVYITGESGSGKEVAARLMHMGSSRADGAFVAVNCGAIPENLMESEFFGYRRGAFTGADNDRIGFLQAAQKGTLF
LDEVGDLPLAMQVKLLRVIQEKKVRRLGDTEEAAIDVRIISATHRNLGEQVDAGEFRQDLFYRLNVIELKMPALREIPED
IPLMVGQVLERFARLSGNNPATISEEAMLALRRYDFPGNVRELENILERALALCSDNVIRETDLYLTQATPREKSAALDG
ALGTRGLPLHDFLDQVEREAILKALEATRFNKTAAAKLLGITFRSLRYRLDRLGID

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=442747 DSM104440_RS19335 WP_212758083.1 2869273..2870643(-) (pilR) [Usitatibacter palustris strain Swamp67]
ATGAATCGCAAGTCCGTGCTCATCGTGGATGACGAAGCCGACATCCGCGAGCTCCTCGTGCTCACGCTCACGCGCATGGG
CGTGGACGCGGACACGGCGGGCACCGTGCAGGAAGCGCAGGAAGCCCTGAAGCACCGGCCCTACGATCTGTGTCTCACCG
ACATGCGATTGCCCGATGGCGACGGCCTCGCGGTGTTGAACCACATCTCCGAGCACTACGGCAACACGCCCGTCGCGGTG
ATCACCGCGTACGGCTCGACGGACAACGCGGTGGCGGCGCTGAAGGCGGGTGCATTCGATTACCTCGCGAAGCCGATCAA
GGTCGAACAGCTGCGCCCGCTCGTGATGAGCGCGCTGAAGCTGCCGAAGCCCGTGCAGGCGCGGCGTGCAGCGATCGGCG
AGACGGCGCAGCCGGGAGCGCCGCGGCTGCTGGGTGAATCGCCGGCCATCGTGCGCGCGCGCGAAATGATCTCGAAGCTC
TCGCGCTCGCAGGCACCGGTCTACATCACGGGTGAGTCGGGTTCGGGCAAGGAAGTCGCCGCGCGCCTCATGCACATGGG
TTCGTCGCGAGCGGATGGCGCGTTCGTCGCGGTGAACTGCGGTGCGATCCCCGAGAACCTCATGGAGAGCGAGTTCTTCG
GCTACCGGCGCGGCGCCTTCACCGGCGCGGACAACGACCGCATCGGCTTCCTCCAGGCCGCGCAGAAGGGCACGCTGTTC
CTCGATGAAGTCGGCGATCTTCCGCTCGCGATGCAGGTGAAGCTCCTGCGCGTGATCCAGGAGAAGAAAGTCCGGCGACT
CGGCGACACCGAGGAAGCCGCCATCGATGTCCGCATCATCTCCGCCACGCACCGCAACCTGGGCGAGCAAGTCGATGCCG
GCGAATTCCGCCAGGACCTCTTCTATCGGTTGAACGTGATCGAACTGAAGATGCCCGCACTGCGCGAGATCCCGGAGGAC
ATCCCCCTCATGGTGGGGCAGGTGCTGGAGCGGTTCGCACGCCTTTCGGGCAACAACCCCGCCACGATCTCCGAGGAAGC
GATGCTCGCACTGCGGCGCTACGACTTCCCGGGCAACGTGCGCGAGCTGGAGAACATCCTCGAGCGCGCGCTGGCCCTGT
GCAGCGACAACGTGATCCGCGAGACCGACCTCTATCTCACGCAGGCCACGCCGCGCGAGAAATCGGCCGCGCTCGATGGC
GCGCTCGGCACCCGCGGCCTGCCGCTCCACGACTTCCTCGACCAGGTCGAGCGCGAAGCGATCCTCAAGGCGCTGGAAGC
CACGCGCTTCAACAAGACCGCCGCCGCGAAGCTGCTGGGCATCACCTTCCGATCGCTTCGCTACCGGTTGGATCGCCTTG
GCATCGACTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(413-452)

Sigma-54 interaction domain (Sigma54_activat)

(143-309)

Response regulator receiver domain (Response_reg)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6M4HBD3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

56.236

100

0.564
  pilR Acinetobacter baumannii strain A118

44.421

100

0.454