Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HKW99_RS16245 Genome accession   NZ_CP053061
Coordinates   3456075..3457667 (+) Length   530 a.a.
NCBI ID   WP_407297831.1    Uniprot ID   -
Organism   Stutzerimonas zhaodongensis strain JZ60     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3451075..3462667
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW99_RS16225 (HKW99_16155) pgeF 3452793..3453527 (-) 735 WP_407292452.1 peptidoglycan editing factor PgeF -
  HKW99_RS16230 (HKW99_16160) rluD 3453524..3454498 (-) 975 WP_407292455.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HKW99_RS16235 (HKW99_16165) - 3454782..3455789 (+) 1008 WP_407292457.1 outer membrane protein assembly factor BamD -
  HKW99_RS16240 (HKW99_16170) - 3455849..3456085 (+) 237 WP_407292460.1 PP0621 family protein -
  HKW99_RS16245 (HKW99_16175) pilS 3456075..3457667 (+) 1593 WP_407297831.1 sensor histidine kinase Regulator
  HKW99_RS16250 (HKW99_16180) pilR 3457776..3459116 (+) 1341 WP_407292463.1 sigma-54-dependent transcriptional regulator Regulator
  HKW99_RS16255 (HKW99_16185) - 3459157..3460212 (-) 1056 WP_407292465.1 DUF2333 family protein -
  HKW99_RS16260 (HKW99_16190) - 3460429..3462042 (+) 1614 WP_407292466.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 59029.21 Da        Isoelectric Point: 8.4569

>NTDB_id=442609 HKW99_RS16245 WP_407297831.1 3456075..3457667(+) (pilS) [Stutzerimonas zhaodongensis strain JZ60]
MGIERLTFFGYQSRRILRLYHLYRVAIGLVLVLLISSDLHSNLMRMINPVAFEYGAWLYLIINILAAVLLQNPRRELPVL
TLALVDVTLLAALFYFAGGTPSGIGNLLIIAVAIANILFHGRSGFFIAAVASTGLIYLTFYLSLNDTAASSQYVQAAALG
TLCFAAALLVQGLTKRLQVSETLARQRAEEVANLEALNAQILQRMRTGILVLDPHERVLLANQGALELLGQESLTGERLA
PRCPEIIKGLHRWRENPTLRPSNFKATPDGATLQPSFATLQHGVKQDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEVLDPADLRLTQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWVHRFASEFRQALPSQ
QTVHVQTLGSSLQTRMDPNQLIQVLTNLVQNGLRYSGQKHGQAQVWLKLFRDEASDLPVLEILDDGAGVPAEQVQNIFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERDEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=442609 HKW99_RS16245 WP_407297831.1 3456075..3457667(+) (pilS) [Stutzerimonas zhaodongensis strain JZ60]
GTGGGAATTGAACGCCTAACGTTTTTCGGCTACCAGAGCCGCAGGATCCTGCGGCTTTATCACCTCTATCGTGTAGCAAT
CGGTTTGGTGCTGGTACTGCTTATCAGCAGCGATCTGCATAGCAACCTGATGCGCATGATCAACCCGGTAGCCTTTGAGT
ACGGCGCCTGGCTCTACCTCATTATCAATATCCTTGCTGCAGTATTACTGCAGAACCCCAGGCGCGAACTACCGGTTCTG
ACCCTTGCTTTGGTGGACGTCACCCTGCTCGCCGCGCTGTTTTATTTTGCCGGCGGGACGCCAAGCGGGATCGGCAATCT
ACTGATCATTGCCGTCGCCATCGCCAACATTCTGTTTCACGGACGCAGCGGATTCTTCATAGCCGCTGTCGCTTCGACCG
GCCTGATCTACCTGACCTTCTACCTCAGCCTTAACGACACCGCCGCAAGCAGCCAGTACGTCCAGGCCGCTGCACTCGGC
ACGCTGTGCTTCGCCGCCGCTCTGCTGGTGCAGGGCCTTACGAAACGGCTCCAAGTGAGCGAAACCCTTGCCCGTCAGCG
CGCCGAGGAGGTTGCCAATCTCGAGGCGCTGAACGCGCAGATCCTGCAGCGCATGCGAACTGGGATCCTCGTACTCGACC
CGCACGAACGGGTACTGCTTGCCAACCAGGGCGCCCTGGAGTTGCTTGGTCAAGAATCCTTGACAGGGGAACGGCTGGCT
CCGCGCTGTCCGGAAATCATCAAAGGGCTGCACCGCTGGCGAGAAAATCCAACGCTGCGGCCCAGTAATTTCAAGGCGAC
GCCGGACGGAGCCACCTTGCAGCCGAGCTTCGCTACGCTACAGCACGGGGTTAAACAGGACACCCTCGTCTTTCTCGAGG
ACATCTCGCAGATCGCACAGAAGGCTCAGCAGCTCAAGCTTGCTTCGCTAGGCCGACTGACAGCGAGTATTGCGCACGAA
ATTCGCAACCCGCTCGGCGCTATCAGCCATGCCGCTCAGCTGCTGCAGGAGTCGGAGGTATTGGATCCAGCGGATTTGCG
CCTTACGCAAATCATTCAGGACCACTCGCGGCGCATGAACCTTGTGATCGAGAACGTGTTGCAGCTGTCGCGCCGCCGCC
AGGCAGAGCCCCAGCTGCTGGACCTGAAATACTGGGTGCATCGCTTCGCAAGCGAATTCCGTCAGGCATTGCCGTCTCAG
CAAACCGTACATGTGCAAACCCTAGGCAGTTCGTTGCAGACCCGGATGGACCCAAATCAGTTGATCCAGGTATTGACCAA
CCTCGTGCAGAACGGCCTGCGGTACAGCGGCCAGAAACACGGTCAGGCACAGGTATGGCTCAAGCTGTTCCGAGACGAAG
CGAGCGACCTTCCAGTACTCGAAATACTCGACGACGGTGCAGGCGTACCGGCGGAGCAGGTACAGAATATATTCGAGCCG
TTTTTCACAACCGAGAGCAAAGGCACCGGACTGGGGCTATATATCTCTCGTGAACTCTGCGAAAGCAACCAGGCCCGCCT
GGATTACCGCGAACGAGACGAAGGGGGCAGCTGCTTTCGCATCGTCTTTGCGCATCCACGCAAGCTGAGCTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(201-254)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.906

100

0.649