Detailed information NTG0442610

Bioinformatically predicted

Overview

• Name: sbcB
• Type: Machinery gene
• Locus tag: IUD19_RS04560
• Genome accession: NZ_CP064326
• Coordinates: 1050395..1051831 (-)
• Length: 478 a.a.
• NCBI ID: WP_031345817.1
• Uniprot ID: -
• Organism: Xylella fastidiosa subsp. multiplex strain Riv5
• Function: promote homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1045395..1056831

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD19_RS04545 (IUD19_04545)	-	1047424..1048617 (-)	1194	Protein_891	toprim domain-containing protein	-
IUD19_RS04550 (IUD19_04550)	-	1048583..1049581 (-)	999	WP_004085391.1	MBL fold metallo-hydrolase	-
IUD19_RS04555 (IUD19_04555)	-	1049712..1050398 (-)	687	WP_012337799.1	TIGR02453 family protein	-
IUD19_RS04560 (IUD19_04560)	sbcB	1050395..1051831 (-)	1437	WP_031345817.1	exodeoxyribonuclease I	Machinery gene
IUD19_RS11295	-	1052019..1052309 (+)	291	WP_027700686.1	hypothetical protein	-
IUD19_RS04565 (IUD19_04565)	-	1052279..1053133 (+)	855	WP_228762584.1	hypothetical protein	-
IUD19_RS04570 (IUD19_04570)	-	1054056..1055693 (+)	1638	WP_038259951.1	Na+/H+ antiporter	-
IUD19_RS04575 (IUD19_04575)	-	1056068..1056616 (+)	549	WP_004085386.1	hypothetical protein	-

Sequence

Protein

• Length: 478 a.a.
• Molecular weight: 54942.21 Da
• Isoelectric Point: 6.5860

>NTDB_id=442610 IUD19_RS04560 WP_031345817.1 1050395..1051831(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain Riv5]
MPPSFLFYDLETFGQDPRRTRIAQFAAVRTDTQLNVIEEPISFLVKPADDLLPSPYATLITGITPQHAQREGISEVAAFA
HITMQMTQPHTCSLGYNTLRFDDEFIRYGLFRHFYDPYEREWRNGNSRWDLLDMLRLMHALRPEGIHWPTREDGAPSFKL
EHLALANHAREGTAHEALSDVYATISMARKFRAAQPRLWNYALQLRDKRFCANLLDITSIQPVLHISQRYPATQHCAAAV
LPLTTHPHINNRIIVFDLNGDIDTLLRLSAEDIADHLYTPALDLPEGEQRIPLKEVHLNKVPALIAWNHLRASDFTRLGL
NPAMLETKAAQLRACGPDLAEKVRHVFSHTYNTANDADASLYDGFLTEEDRRLLPQLRASPADTLATFEQRLRDPRLIEL
LFRYRARNFPETLSCDEQTRWDTYRRRRLTTDTGLSELTFDQYHAQIAELRITHSQDATKQTLLDQLAAWGSELSRTL

Nucleotide

• Length: 1437 bp

>NTDB_id=442610 IUD19_RS04560 WP_031345817.1 1050395..1051831(-) (sbcB) [Xylella fastidiosa subsp. multiplex strain Riv5]
ATGCCCCCCAGCTTTCTGTTCTACGACTTAGAAACTTTCGGTCAGGACCCCCGTCGTACCCGCATCGCACAGTTTGCCGC
AGTACGGACGGACACCCAATTAAACGTCATCGAAGAACCAATTAGTTTCCTCGTCAAACCCGCCGATGACCTGCTCCCCT
CACCCTACGCCACACTCATCACCGGAATTACCCCGCAACACGCACAACGTGAAGGCATCAGCGAAGTCGCAGCCTTCGCG
CACATTACAATGCAGATGACACAACCACACACCTGCTCCCTCGGCTACAACACGCTACGTTTCGACGACGAATTCATCCG
CTACGGGCTATTCCGTCACTTCTACGACCCATACGAACGCGAGTGGCGCAACGGCAATTCACGGTGGGACCTGCTGGACA
TGCTGCGACTCATGCACGCACTACGCCCAGAAGGCATCCACTGGCCAACACGTGAAGACGGTGCCCCCTCATTCAAACTC
GAACACCTAGCCCTTGCCAACCATGCACGCGAAGGCACAGCACACGAAGCATTATCAGATGTCTATGCCACCATCAGCAT
GGCGCGTAAATTCCGCGCCGCACAACCGCGCCTCTGGAATTACGCACTGCAACTGCGTGACAAACGCTTTTGCGCCAACC
TGCTCGACATCACCTCAATACAACCAGTACTGCATATCTCACAGCGCTATCCTGCCACACAACACTGCGCCGCCGCCGTG
CTGCCACTGACCACACACCCACACATCAACAACCGCATCATTGTTTTCGACTTGAACGGCGACATAGACACACTGCTGCG
CCTGTCTGCAGAAGACATCGCCGACCACCTGTACACCCCAGCCCTGGATTTACCCGAAGGCGAGCAACGTATCCCACTGA
AAGAAGTCCACCTAAACAAAGTACCGGCCCTGATCGCCTGGAACCACCTGCGTGCATCGGACTTCACACGCCTTGGCCTG
AACCCGGCCATGCTAGAAACCAAAGCGGCACAACTGCGCGCATGCGGACCGGATTTGGCCGAAAAAGTCCGCCACGTCTT
CAGCCATACCTACAACACCGCCAACGACGCTGATGCTTCACTGTACGACGGCTTTCTCACCGAAGAGGACCGCCGCCTCC
TGCCACAACTACGCGCCTCCCCTGCTGACACCTTGGCGACGTTCGAACAGCGCCTTCGCGATCCACGTCTCATCGAACTG
CTGTTCCGCTACCGCGCACGTAATTTTCCAGAAACCCTCTCTTGCGACGAACAGACACGCTGGGACACCTATCGGCGACG
CCGTCTGACCACCGACACCGGCCTATCAGAACTCACCTTCGACCAATACCACGCCCAAATTGCGGAATTACGGATAACGC
ACTCCCAAGATGCCACCAAACAGACCCTATTGGACCAACTCGCCGCCTGGGGCTCCGAACTATCCCGCACCCTATGA

Domains

Predicted by InterProScan.

• Exonuclease C-terminal (ExoI_SH3) (206-472)

• Exonuclease (RNase_T) (7-185)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sbcB	Vibrio cholerae O1 biovar El Tor strain E7946	40.421	99.372	0.402