Detailed information NTG0442610

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HKW99_RS16250
• Genome accession: NZ_CP053061
• Coordinates: 3457776..3459116 (+)
• Length: 446 a.a.
• NCBI ID: WP_407292463.1
• Uniprot ID: -
• Organism: Stutzerimonas zhaodongensis strain JZ60
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 3452776..3464116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKW99_RS16225 (HKW99_16155)	pgeF	3452793..3453527 (-)	735	WP_407292452.1	peptidoglycan editing factor PgeF	-
HKW99_RS16230 (HKW99_16160)	rluD	3453524..3454498 (-)	975	WP_407292455.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HKW99_RS16235 (HKW99_16165)	-	3454782..3455789 (+)	1008	WP_407292457.1	outer membrane protein assembly factor BamD	-
HKW99_RS16240 (HKW99_16170)	-	3455849..3456085 (+)	237	WP_407292460.1	PP0621 family protein	-
HKW99_RS16245 (HKW99_16175)	pilS	3456075..3457667 (+)	1593	WP_407297831.1	sensor histidine kinase	Regulator
HKW99_RS16250 (HKW99_16180)	pilR	3457776..3459116 (+)	1341	WP_407292463.1	sigma-54-dependent transcriptional regulator	Regulator
HKW99_RS16255 (HKW99_16185)	-	3459157..3460212 (-)	1056	WP_407292465.1	DUF2333 family protein	-
HKW99_RS16260 (HKW99_16190)	-	3460429..3462042 (+)	1614	WP_407292466.1	diguanylate cyclase	-
HKW99_RS16265 (HKW99_16195)	-	3462090..3464054 (+)	1965	WP_407292468.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49820.20 Da
• Isoelectric Point: 6.2832

>NTDB_id=442610 HKW99_RS16250 WP_407292463.1 3457776..3459116(+) (pilR) [Stutzerimonas zhaodongensis strain JZ60]
MTARQKALIIDDEPDIRELLEITLGRMKLDTRSARNLKEARECLAREHYDLCLTDMRLPDGSGLELVQFIQQQYPQLPVA
MITAYGSLDTAIGALKAGAFDFLTKPVDLGRLRELVNTALRLRNPNPNDLTVDSRLLGASPPMNALRKQIGKLARSQAPV
YISGESGSGKELVARLIHEQGARHEQPFVPVNCGAIPSELMESEFFGHKKGSFTGAMEDKPGLFQAANGGTLFLDEVADL
PLPMQVKLLRAIQEKAVRSVGGSKEVVVDVRILCATHKDLASEVTAGRFRQDLYYRLNVIELRVPPLRERREDIAQLAEV
MLRRLAQETGDTPARLQADALAKLQSYRFPGNVRELENMLERAYTLCDGDEIKPSDLRLSDAPGMPENGEASLAQIDNLE
DHLEDVERKLIMQALEETRWNRTAAAQRLGLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=442610 HKW99_RS16250 WP_407292463.1 3457776..3459116(+) (pilR) [Stutzerimonas zhaodongensis strain JZ60]
ATGACTGCCCGCCAGAAAGCACTGATCATCGATGATGAACCCGATATCCGTGAGCTCCTGGAGATTACGCTTGGGCGCAT
GAAGCTGGACACCCGTAGCGCGCGCAATCTGAAGGAAGCCCGGGAGTGCCTGGCCCGTGAGCACTACGATCTGTGTTTGA
CCGACATGCGCCTTCCTGACGGCTCCGGCCTCGAACTGGTCCAGTTCATCCAGCAACAGTACCCGCAGTTGCCAGTGGCA
ATGATTACCGCCTATGGCAGCCTCGATACAGCCATCGGTGCGCTCAAGGCCGGCGCTTTCGACTTTCTGACCAAACCGGT
GGACCTTGGGCGCCTGCGCGAACTGGTCAATACCGCACTTCGCCTGCGCAACCCGAACCCCAACGACCTGACGGTCGATA
GCCGCTTACTGGGCGCCTCCCCGCCCATGAATGCGCTACGCAAACAGATCGGGAAGCTCGCTCGCAGCCAGGCACCGGTC
TATATAAGCGGTGAGTCTGGCAGCGGAAAGGAACTGGTTGCGCGACTGATCCACGAACAAGGCGCGCGCCATGAACAGCC
ATTCGTCCCGGTCAACTGCGGCGCGATCCCCTCCGAGCTGATGGAGAGCGAGTTCTTCGGGCACAAGAAAGGCAGCTTTA
CCGGAGCAATGGAGGACAAGCCAGGCCTGTTCCAGGCAGCCAATGGCGGCACACTGTTTCTCGACGAGGTAGCTGACCTT
CCACTGCCAATGCAGGTGAAACTGCTACGGGCGATTCAGGAGAAGGCGGTGCGTTCGGTTGGCGGCTCGAAGGAAGTCGT
GGTCGATGTGCGGATTCTTTGCGCCACCCACAAAGACTTGGCCAGCGAAGTCACAGCTGGCCGCTTTCGCCAGGACCTTT
ATTATCGATTGAACGTAATCGAGCTGCGCGTACCGCCCTTGCGCGAACGCCGGGAAGACATTGCCCAGCTGGCAGAGGTC
ATGCTTCGGCGCCTCGCCCAGGAAACCGGCGACACACCGGCCCGACTGCAAGCTGACGCGCTGGCCAAACTGCAGAGCTA
TCGGTTTCCGGGCAACGTTCGCGAACTGGAAAACATGCTTGAGCGCGCTTATACACTCTGTGATGGCGACGAAATAAAAC
CCAGCGACCTCCGCCTTTCCGATGCTCCAGGCATGCCGGAGAACGGCGAAGCCAGCCTGGCCCAGATCGACAATCTTGAA
GACCATCTCGAGGATGTCGAGCGCAAGTTGATCATGCAGGCGCTGGAAGAGACTCGCTGGAACCGCACCGCTGCTGCCCA
ACGGCTAGGGCTGTCGTTCCGCTCCATGCGGTATCGGTTGAAAAAACTTGGGCTGGATTGA

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Response regulator receiver domain (Response_reg) (8-116)

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	84.234	99.552	0.839
pilR	Acinetobacter baumannii strain A118	49.348	100	0.509
luxO	Vibrio cholerae strain A1552	39.374	100	0.395