Detailed information NTG0442598

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: IUD19_RS02475
• Genome accession: NZ_CP064326
• Coordinates: 577810..579090 (+)
• Length: 426 a.a.
• NCBI ID: WP_004086553.1
• Uniprot ID: B0U5N2
• Organism: Xylella fastidiosa subsp. multiplex strain Riv5
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 572810..584090

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD19_RS02455 (IUD19_02455)	-	573269..573730 (-)	462	WP_004086550.1	hypothetical protein	-
IUD19_RS02465 (IUD19_02465)	tig	575623..576918 (+)	1296	WP_004086551.1	trigger factor	-
IUD19_RS02470 (IUD19_02470)	clpP	577056..577682 (+)	627	WP_004086552.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
IUD19_RS02475 (IUD19_02475)	clpX	577810..579090 (+)	1281	WP_004086553.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
IUD19_RS02480 (IUD19_02480)	lon	579242..581713 (+)	2472	WP_004086554.1	endopeptidase La	-
IUD19_RS02485 (IUD19_02485)	-	581934..582218 (+)	285	WP_004086555.1	HU family DNA-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 47064.10 Da
• Isoelectric Point: 5.4589

>NTDB_id=442598 IUD19_RS02475 WP_004086553.1 577810..579090(+) (clpX) [Xylella fastidiosa subsp. multiplex strain Riv5]
MSEDRLSRSGDGNKILYCSFCGKSQREVRKLIAGPSVFICDECVELCNDIIREELEEKSQSARSSLPKPKEILEVLDQYV
IGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTKNILFICGGAFAGLDKVIQQRCTEAGGIGFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELD
ESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKTGARGLRTIVELVLLDTMYELPSQEGISKVVV
DESVIENKSEPYLIYQTMPAKVASGE

Nucleotide

• Length: 1281 bp

>NTDB_id=442598 IUD19_RS02475 WP_004086553.1 577810..579090(+) (clpX) [Xylella fastidiosa subsp. multiplex strain Riv5]
ATGAGCGAAGACCGGCTAAGCCGTTCTGGTGACGGAAATAAGATTCTTTACTGCTCATTCTGCGGTAAAAGCCAGCGTGA
GGTTCGCAAGCTGATCGCAGGTCCAAGCGTATTCATTTGTGATGAATGCGTTGAGTTGTGTAACGATATTATTCGCGAGG
AACTGGAAGAAAAGTCGCAATCTGCGCGTTCCAGTTTGCCTAAGCCCAAGGAGATCCTTGAGGTTTTGGATCAGTATGTC
ATTGGCCAGCAGCGTGCTAAGAGGACTCTTGCTGTAGCCGTCTACAACCATTATAAACGGATCGAAAGTCGGCATAAGAA
TGACGACATCGAATTGGCTAAATCTAATATTTTGTTGGTTGGCCCAACAGGCTCCGGCAAGACGTTGCTTGCCGAGACAT
TGGCGCGTTTGCTGAATGTGCCTTTCACGATTGCCGATGCAACCACATTGACTGAGGCTGGCTATGTTGGTGAGGACGTG
GAGAATATCATTCAGAAGTTGTTACAGAAGTGTGATTACGACGTTGAAAAGGCGCAGCATGGGATCGTCTACATTGATGA
AATAGATAAGATTTCCCGTAAGAGTGAGAATCCATCAATTACCCGAGATGTTTCTGGTGAGGGTGTGCAGCAGGCATTGC
TGAAATTGATAGAAGGTACGGTTGCTTCTGTGCCTCCTCAGGGTGGTCGCAAGCATCCACAGCAGGAATTCCTGCAGGTC
GATACCAAGAATATTTTATTCATCTGTGGCGGTGCTTTTGCTGGTCTAGATAAGGTGATCCAACAGCGTTGCACTGAAGC
TGGTGGTATTGGCTTTGGTGTTAAGGTCAAAAGCTCAGAGAGTAAGCGCGATGTTGGTAAGGTACTAGCTGGTGTCGAGC
CAGAGGACCTGATTAAGTTTGGGTTAATCCCTGAATTCGTTGGGCGATTGCCAGTTGTAGCTACACTTGATGAGCTGGAT
GAGTCGGCTTTGGTTAAAATTTTAACCGAGCCAAAGAACGCTATTACAAAACAGTTCAAAAAGCTGTTTGAGATGGAGAA
CGTAGAGTTGGAATTCCGTCAGGACGCGCTTTCAGCAGTGGCTAGGAAAGCTCTTAAGCGCAAGACTGGTGCGCGTGGTC
TCCGTACTATTGTTGAGTTGGTTCTGCTGGATACCATGTACGAACTTCCTTCTCAGGAAGGTATTAGTAAGGTTGTTGTC
GATGAATCGGTTATTGAAAATAAATCTGAGCCTTATCTGATTTATCAAACGATGCCTGCAAAGGTTGCTTCCGGCGAATG
A

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: B0U5N2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.5	93.897	0.587
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.276	93.427	0.516