Detailed information NTG0442572

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HKW95_RS25455
• Genome accession: NZ_CP053058
• Coordinates: 5675996..5677324 (+)
• Length: 442 a.a.
• NCBI ID: WP_023969408.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis subsp. aurantiaca strain FS2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5670996..5682324

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKW95_RS25435 (HKW95_25270)	pgeF	5672495..5673220 (-)	726	WP_023969407.1	peptidoglycan editing factor PgeF	-
HKW95_RS25440 (HKW95_25275)	rluD	5673217..5674179 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HKW95_RS25445 (HKW95_25280)	-	5674332..5675354 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
HKW95_RS25450 (HKW95_25285)	-	5675489..5675722 (+)	234	WP_007924721.1	PP0621 family protein	-
HKW95_RS25455 (HKW95_25290)	pilR	5675996..5677324 (+)	1329	WP_023969408.1	sigma-54 dependent transcriptional regulator	Regulator
HKW95_RS25460 (HKW95_25295)	thiO	5677321..5678421 (-)	1101	WP_023969409.1	glycine oxidase ThiO	-
HKW95_RS25465 (HKW95_25300)	-	5678476..5678877 (-)	402	WP_009050937.1	type IV pilin protein	-
HKW95_RS25470 (HKW95_25305)	-	5678891..5681959 (-)	3069	WP_023969410.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48821.33 Da
• Isoelectric Point: 9.3860

>NTDB_id=442572 HKW95_RS25455 WP_023969408.1 5675996..5677324(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain FS2]
MGPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSACARQETAIHALKAGAIDFLSKPVALARLRELLNSALPGSTPPKPVTSPLLGDSTAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELPVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=442572 HKW95_RS25455 WP_023969408.1 5675996..5677324(+) (pilR) [Pseudomonas chlororaphis subsp. aurantiaca strain FS2]
ATGGGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGAAT
GCAGCGCCACACCCGTAGCGCCCGCACCCTGGGCGAAGCCCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCGCCTGCGCCCGCCAGGAAACCGCGATCCACGCCCTGAAAGCCGGTGCCATCGACTTCCTGAGCAAGCCCGT
GGCCCTGGCGCGCTTGCGCGAGCTGCTGAACAGCGCCCTGCCCGGATCGACACCGCCAAAGCCTGTGACCAGTCCTTTGC
TGGGCGATTCGACTGCCATGCACAAACTGCGCGGGCAGATCGGCAAGCTGGCCCGGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGTAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGACCAGGGACCACGGGCCGGACGGGCCTTCGTGCC
GATCAACTGCGGGGCCATTCCACCGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCATAAGACGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGCCGGTGCCACCGCTAAGGGCACGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAACCT
GTCGTTTCGTTCTATGCGCTACAGGCTGAAGAAGCTCGGTCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	68.397	100	0.686
pilR	Acinetobacter baumannii strain A118	44.662	100	0.464