Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HKW96_RS27865 Genome accession   NZ_CP053057
Coordinates   6185138..6185545 (-) Length   135 a.a.
NCBI ID   WP_007929962.1    Uniprot ID   A0AAJ0ZLS6
Organism   Pseudomonas chlororaphis strain RP4     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 6180138..6190545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW96_RS27850 (HKW96_27850) - 6182039..6184102 (-) 2064 WP_009051306.1 methyl-accepting chemotaxis protein -
  HKW96_RS27855 (HKW96_27855) - 6184178..6184717 (-) 540 WP_023968001.1 chemotaxis protein CheW -
  HKW96_RS27860 (HKW96_27860) pilH 6184729..6185094 (-) 366 WP_007953328.1 twitching motility response regulator PilH -
  HKW96_RS27865 (HKW96_27865) pilG 6185138..6185545 (-) 408 WP_007929962.1 twitching motility response regulator PilG Regulator
  HKW96_RS27870 (HKW96_27870) gshB 6185783..6186739 (+) 957 WP_023968000.1 glutathione synthase -
  HKW96_RS27875 (HKW96_27875) - 6186860..6187759 (+) 900 WP_023967999.1 energy transducer TonB -
  HKW96_RS27880 (HKW96_27880) - 6187836..6188405 (+) 570 WP_007929972.1 YqgE/AlgH family protein -
  HKW96_RS27885 (HKW96_27885) ruvX 6188405..6188842 (+) 438 WP_023967998.1 Holliday junction resolvase RuvX -
  HKW96_RS27890 (HKW96_27890) pyrR 6188964..6189470 (+) 507 WP_007929976.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  HKW96_RS27895 (HKW96_27895) - 6189497..6190501 (+) 1005 WP_007929978.1 aspartate carbamoyltransferase catalytic subunit -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14681.06 Da        Isoelectric Point: 7.2445

>NTDB_id=442550 HKW96_RS27865 WP_007929962.1 6185138..6185545(-) (pilG) [Pseudomonas chlororaphis strain RP4]
MEQQSSALKVMVIDDSKTIRRTAETLLKNVGCEVITAVDGFEALAKIADNHPGIIFVDIMMPRLDGYQTCALIKNNSAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAHVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=442550 HKW96_RS27865 WP_007929962.1 6185138..6185545(-) (pilG) [Pseudomonas chlororaphis strain RP4]
ATGGAACAGCAATCCAGCGCCCTCAAGGTGATGGTGATCGATGATTCGAAGACGATTCGCCGCACGGCCGAAACGCTGTT
GAAGAATGTGGGCTGTGAAGTCATCACCGCGGTCGACGGTTTCGAGGCCCTGGCCAAGATCGCCGACAACCACCCGGGCA
TCATCTTCGTCGACATCATGATGCCGCGGCTCGATGGCTATCAGACCTGCGCACTGATCAAGAACAACAGCGCGTTCAAG
TCCACGCCGGTGATCATGCTGTCCTCCAAGGACGGCCTGTTCGACAAGGCCAAGGGTCGCATCGTCGGCTCTGACCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAGCTGCTGAGCGCGATCAAGGCCCATGTGCCGGGGTTCGCCGCAGTAGAACAAG
CACATTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

76.8

92.593

0.711
  vicR Streptococcus mutans UA159

41.27

93.333

0.385