Detailed information NTG0442546

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HKW96_RS25460
• Genome accession: NZ_CP053057
• Coordinates: 5676015..5677343 (+)
• Length: 442 a.a.
• NCBI ID: WP_023969408.1
• Uniprot ID: -
• Organism: Pseudomonas chlororaphis strain RP4
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5671015..5682343

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKW96_RS25440 (HKW96_25440)	pgeF	5672514..5673239 (-)	726	WP_023969407.1	peptidoglycan editing factor PgeF	-
HKW96_RS25445 (HKW96_25445)	rluD	5673236..5674198 (-)	963	WP_009050933.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HKW96_RS25450 (HKW96_25450)	-	5674351..5675373 (+)	1023	WP_009050934.1	outer membrane protein assembly factor BamD	-
HKW96_RS25455 (HKW96_25455)	-	5675508..5675741 (+)	234	WP_007924721.1	PP0621 family protein	-
HKW96_RS25460 (HKW96_25460)	pilR	5676015..5677343 (+)	1329	WP_023969408.1	sigma-54 dependent transcriptional regulator	Regulator
HKW96_RS25465 (HKW96_25465)	thiO	5677340..5678440 (-)	1101	WP_023969409.1	glycine oxidase ThiO	-
HKW96_RS25470 (HKW96_25470)	-	5678495..5678896 (-)	402	WP_009050937.1	type IV pilin protein	-
HKW96_RS25475 (HKW96_25475)	-	5678910..5681978 (-)	3069	WP_023969410.1	pilus assembly protein	-

Sequence

Protein

• Length: 442 a.a.
• Molecular weight: 48821.33 Da
• Isoelectric Point: 9.3860

>NTDB_id=442546 HKW96_RS25460 WP_023969408.1 5676015..5677343(+) (pilR) [Pseudomonas chlororaphis strain RP4]
MGPRQKVLIVDDDPGIREYLEISLGRMQRHTRSARTLGEARHWLAREGFDLCLSDLHLPDGTGLELLEHIQRHRLRMPLA
ILSACARQETAIHALKAGAIDFLSKPVALARLRELLNSALPGSTPPKPVTSPLLGDSTAMHKLRGQIGKLARSQASVYIS
GESGSGKELVARAIHDQGPRAGRAFVPINCGAIPPELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADLPLA
MQVKLLRALQEKAVRCVGGQQEVQVDVRILCATHKTLQAEVHAGRFRQDLYYRLNVIELPVPPLRARKADIEPLATAILE
RLAQGNGQQLARLQPGALLALQGYDFPGNVRELENLLERAHTLCENRQIEARDLQLTPNGAHPAIAPGPAQVIDLEGYLQ
EVERRLILQALEHTRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1329 bp

>NTDB_id=442546 HKW96_RS25460 WP_023969408.1 5676015..5677343(+) (pilR) [Pseudomonas chlororaphis strain RP4]
ATGGGCCCACGGCAAAAAGTCCTGATCGTCGATGACGATCCAGGCATTCGCGAATATCTGGAAATCAGCCTCGGCCGAAT
GCAGCGCCACACCCGTAGCGCCCGCACCCTGGGCGAAGCCCGTCACTGGCTGGCCCGGGAAGGTTTCGACCTGTGCTTGA
GCGACCTGCATCTGCCCGACGGCACGGGGCTGGAATTACTCGAGCATATCCAGCGCCACCGGCTGCGAATGCCGCTGGCC
ATACTCAGCGCCTGCGCCCGCCAGGAAACCGCGATCCACGCCCTGAAAGCCGGTGCCATCGACTTCCTGAGCAAGCCCGT
GGCCCTGGCGCGCTTGCGCGAGCTGCTGAACAGCGCCCTGCCCGGATCGACACCGCCAAAGCCTGTGACCAGTCCTTTGC
TGGGCGATTCGACTGCCATGCACAAACTGCGCGGGCAGATCGGCAAGCTGGCCCGGAGTCAGGCCTCGGTCTATATCAGC
GGAGAGTCCGGTAGCGGCAAGGAACTGGTCGCCCGCGCGATCCACGACCAGGGACCACGGGCCGGACGGGCCTTCGTGCC
GATCAACTGCGGGGCCATTCCACCGGAACTGATGGAAAGCGAGTTTTTCGGCCATCGCAAAGGCAGCTTCAGCGGCGCCA
TCGAAGACAAACCCGGCCTGTTCCAGGCAGCGCACGGCGGCACGCTGTTTCTCGATGAGGTGGCCGATCTGCCGCTGGCG
ATGCAGGTCAAATTGCTCCGTGCGCTCCAGGAGAAGGCCGTGCGCTGTGTCGGCGGGCAGCAGGAGGTCCAGGTCGATGT
GCGCATTCTCTGCGCCACCCATAAGACGCTGCAGGCGGAAGTGCATGCCGGGCGCTTTCGCCAGGATCTCTACTACCGCC
TCAACGTGATCGAACTGCCGGTGCCACCGCTAAGGGCACGCAAGGCTGATATCGAACCCTTGGCCACAGCCATCCTCGAG
CGCCTGGCGCAGGGCAACGGCCAACAGTTGGCGCGGCTCCAGCCAGGCGCGCTGCTGGCACTCCAGGGCTACGACTTTCC
CGGCAACGTGCGCGAGCTGGAGAACCTGCTCGAACGGGCGCACACCCTGTGCGAGAACCGGCAGATCGAAGCACGCGACC
TGCAACTGACACCAAACGGCGCCCACCCGGCCATCGCGCCCGGCCCGGCACAGGTGATCGACCTTGAAGGTTATCTGCAA
GAAGTCGAGCGCCGGCTGATCCTCCAGGCCCTGGAGCACACCCGCTGGAACCGCACGGCGGCGGCCCAGCGCTTGAACCT
GTCGTTTCGTTCTATGCGCTACAGGCTGAAGAAGCTCGGTCTGGATTAG

Domains

Predicted by InterproScan.

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (399-439)

• Sigma-54 interaction domain (Sigma54_activat) (134-299)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	68.397	100	0.686
pilR	Acinetobacter baumannii strain A118	44.662	100	0.464