Detailed information NTG0442540

Bioinformatically predicted

Overview

• Name: clpX
• Type: Regulator
• Locus tag: IUD24_RS02450
• Genome accession: NZ_CP064325
• Coordinates: 576525..577805 (+)
• Length: 426 a.a.
• NCBI ID: WP_004086553.1
• Uniprot ID: B0U5N2
• Organism: Xylella fastidiosa subsp. multiplex strain Red Oak
• Function: require for competence development (predicted from homology) Competence regulation

Genomic Context

Location: 571525..582805

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IUD24_RS02430 (IUD24_02430)	-	571984..572445 (-)	462	WP_004086550.1	hypothetical protein	-
IUD24_RS02440 (IUD24_02440)	tig	574338..575633 (+)	1296	WP_004086551.1	trigger factor	-
IUD24_RS02445 (IUD24_02445)	clpP	575771..576397 (+)	627	WP_004086552.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
IUD24_RS02450 (IUD24_02450)	clpX	576525..577805 (+)	1281	WP_004086553.1	ATP-dependent Clp protease ATP-binding subunit ClpX	Regulator
IUD24_RS02455 (IUD24_02455)	lon	577957..580428 (+)	2472	WP_012337690.1	endopeptidase La	-
IUD24_RS02460 (IUD24_02460)	-	580649..580933 (+)	285	WP_004086555.1	HU family DNA-binding protein	-

Sequence

Protein

• Length: 426 a.a.
• Molecular weight: 47064.10 Da
• Isoelectric Point: 5.4589

>NTDB_id=442540 IUD24_RS02450 WP_004086553.1 576525..577805(+) (clpX) [Xylella fastidiosa subsp. multiplex strain Red Oak]
MSEDRLSRSGDGNKILYCSFCGKSQREVRKLIAGPSVFICDECVELCNDIIREELEEKSQSARSSLPKPKEILEVLDQYV
IGQQRAKRTLAVAVYNHYKRIESRHKNDDIELAKSNILLVGPTGSGKTLLAETLARLLNVPFTIADATTLTEAGYVGEDV
ENIIQKLLQKCDYDVEKAQHGIVYIDEIDKISRKSENPSITRDVSGEGVQQALLKLIEGTVASVPPQGGRKHPQQEFLQV
DTKNILFICGGAFAGLDKVIQQRCTEAGGIGFGVKVKSSESKRDVGKVLAGVEPEDLIKFGLIPEFVGRLPVVATLDELD
ESALVKILTEPKNAITKQFKKLFEMENVELEFRQDALSAVARKALKRKTGARGLRTIVELVLLDTMYELPSQEGISKVVV
DESVIENKSEPYLIYQTMPAKVASGE

Nucleotide

• Length: 1281 bp

>NTDB_id=442540 IUD24_RS02450 WP_004086553.1 576525..577805(+) (clpX) [Xylella fastidiosa subsp. multiplex strain Red Oak]
ATGAGCGAAGACCGGCTAAGCCGTTCTGGTGACGGAAATAAGATTCTTTACTGCTCATTCTGCGGTAAAAGCCAGCGTGA
GGTTCGCAAGCTGATCGCAGGTCCAAGCGTATTCATTTGTGATGAATGCGTTGAGTTGTGTAACGATATTATTCGCGAGG
AACTGGAAGAAAAGTCGCAATCTGCGCGTTCCAGTTTGCCTAAGCCCAAGGAGATCCTTGAGGTTTTGGATCAGTATGTC
ATTGGCCAGCAGCGTGCTAAGAGGACTCTTGCTGTAGCCGTCTACAACCATTATAAACGGATCGAAAGTCGGCATAAGAA
TGACGACATCGAATTGGCTAAATCTAATATTTTGTTGGTTGGCCCAACAGGCTCCGGCAAGACGTTGCTTGCCGAGACAT
TGGCGCGTTTGCTGAATGTGCCTTTCACGATTGCCGATGCAACCACATTGACTGAGGCTGGCTATGTTGGTGAGGACGTG
GAGAATATCATTCAGAAGTTGTTACAGAAGTGTGATTACGACGTTGAAAAGGCGCAGCATGGGATCGTCTACATTGATGA
AATAGATAAGATTTCCCGTAAGAGTGAGAATCCATCAATTACCCGAGATGTTTCTGGTGAGGGTGTGCAGCAGGCATTGC
TGAAATTGATAGAAGGTACGGTTGCTTCTGTGCCTCCTCAGGGTGGTCGCAAGCATCCACAGCAGGAATTCCTGCAGGTC
GATACCAAGAATATTTTATTCATCTGTGGCGGTGCTTTTGCTGGTCTAGATAAGGTGATCCAACAGCGTTGCACTGAAGC
TGGTGGTATTGGCTTTGGTGTTAAGGTCAAAAGCTCAGAGAGTAAGCGCGATGTTGGTAAGGTACTAGCTGGTGTCGAGC
CAGAGGACCTGATTAAGTTTGGGTTAATCCCTGAATTCGTTGGGCGATTGCCAGTTGTAGCTACACTTGATGAGCTGGAT
GAGTCGGCTTTGGTTAAAATTTTAACCGAGCCAAAGAACGCTATTACAAAACAGTTCAAAAAGCTGTTTGAGATGGAGAA
CGTAGAGTTGGAATTCCGTCAGGACGCGCTTTCAGCAGTGGCTAGGAAAGCTCTTAAGCGCAAGACTGGTGCGCGTGGTC
TCCGTACTATTGTTGAGTTGGTTCTGCTGGATACCATGTACGAACTTCCTTCTCAGGAAGGTATTAGTAAGGTTGTTGTC
GATGAATCGGTTATTGAAAATAAATCTGAGCCTTATCTGATTTATCAAACGATGCCTGCAAAGGTTGCTTCCGGCGAATG
A

Domains

Predicted by InterProScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (319-396)

• ClpX C4-type zinc finger (zf-C4_ClpX) (16-53)

• AAA domain (Cdc48 subfamily) (AAA_2) (114-312)

3D structure

• AlphaFold DB: B0U5N2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpX	Streptococcus mutans UA159	62.5	93.897	0.587
clpX	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	55.276	93.427	0.516