Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HKW96_RS08610 Genome accession   NZ_CP053057
Coordinates   1886363..1886998 (+) Length   211 a.a.
NCBI ID   WP_023968416.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain RP4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1881363..1891998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW96_RS08590 (HKW96_08590) - 1881608..1882540 (+) 933 WP_023968412.1 ABC transporter ATP-binding protein -
  HKW96_RS08595 (HKW96_08595) - 1882537..1883316 (+) 780 WP_023968413.1 ABC transporter permease -
  HKW96_RS08600 (HKW96_08600) - 1883365..1883880 (-) 516 WP_023968414.1 DUF2062 domain-containing protein -
  HKW96_RS08605 (HKW96_08605) comA 1884029..1886260 (+) 2232 WP_023968415.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKW96_RS08610 (HKW96_08610) exbB 1886363..1886998 (+) 636 WP_023968416.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKW96_RS08615 (HKW96_08615) - 1886995..1887423 (+) 429 WP_023968417.1 biopolymer transporter ExbD -
  HKW96_RS08620 (HKW96_08620) lpxK 1887423..1888433 (+) 1011 WP_023968418.1 tetraacyldisaccharide 4'-kinase -
  HKW96_RS08625 (HKW96_08625) - 1888457..1888642 (+) 186 WP_007931663.1 Trm112 family protein -
  HKW96_RS08630 (HKW96_08630) kdsB 1888639..1889403 (+) 765 WP_023968419.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKW96_RS08635 (HKW96_08635) - 1889403..1889867 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  HKW96_RS08640 (HKW96_08640) murB 1889864..1890883 (+) 1020 WP_023968420.1 UDP-N-acetylmuramate dehydrogenase -
  HKW96_RS08645 (HKW96_08645) - 1891132..1891602 (+) 471 WP_016702177.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22917.10 Da        Isoelectric Point: 8.1069

>NTDB_id=442537 HKW96_RS08610 WP_023968416.1 1886363..1886998(+) (exbB) [Pseudomonas chlororaphis strain RP4]
MWELVKSGGWMMLPIILSSIVAVGIIAERLWTLRASRVTPPHLLGQVWRWIKDKQLNKDKLKELRAHSPLGEILAAGLAN
SKHGREVMKECIEEAAARVIHELERYLNALGTIAAMAPLLGLLGTVLGMIDIFSSFMGSGMASNAAVLAGGISKALITTA
SGLMVGIPAVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=442537 HKW96_RS08610 WP_023968416.1 1886363..1886998(+) (exbB) [Pseudomonas chlororaphis strain RP4]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATTGTCGCGGTCGGCATCATTGC
CGAGCGTCTGTGGACCCTGCGGGCCAGCCGCGTTACCCCGCCACATCTGCTGGGGCAGGTGTGGCGCTGGATCAAGGACA
AACAGCTGAACAAGGACAAGCTCAAGGAGCTGCGCGCCCATTCACCCCTGGGCGAGATCCTGGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGGTCATGAAGGAGTGCATCGAAGAGGCCGCCGCCCGGGTCATTCATGAACTGGAGCGCTACCT
CAATGCCCTTGGCACCATCGCCGCGATGGCGCCGTTGCTGGGTTTGCTGGGTACGGTGCTGGGCATGATCGATATTTTCA
GCTCGTTCATGGGCTCGGGCATGGCCAGCAACGCCGCGGTGCTGGCCGGTGGTATCTCCAAGGCGCTGATTACCACCGCG
TCCGGCTTGATGGTCGGTATCCCGGCAGTGTTCTTCCACCGTTTCCTGCAACGCCGGGTCGATGAACTGGTCGTTGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAAGTGGTGCAGGGCGACCGCGACGTCGATCTGGCCGAGGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

87.204

100

0.872