Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HKW96_RS08605 Genome accession   NZ_CP053057
Coordinates   1884029..1886260 (+) Length   743 a.a.
NCBI ID   WP_023968415.1    Uniprot ID   -
Organism   Pseudomonas chlororaphis strain RP4     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1879029..1891260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKW96_RS08580 (HKW96_08580) - 1880150..1880809 (+) 660 WP_023968410.1 transglutaminase family protein -
  HKW96_RS08585 (HKW96_08585) - 1880852..1881475 (+) 624 WP_023968411.1 glutathione S-transferase family protein -
  HKW96_RS08590 (HKW96_08590) - 1881608..1882540 (+) 933 WP_023968412.1 ABC transporter ATP-binding protein -
  HKW96_RS08595 (HKW96_08595) - 1882537..1883316 (+) 780 WP_023968413.1 ABC transporter permease -
  HKW96_RS08600 (HKW96_08600) - 1883365..1883880 (-) 516 WP_023968414.1 DUF2062 domain-containing protein -
  HKW96_RS08605 (HKW96_08605) comA 1884029..1886260 (+) 2232 WP_023968415.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKW96_RS08610 (HKW96_08610) exbB 1886363..1886998 (+) 636 WP_023968416.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKW96_RS08615 (HKW96_08615) - 1886995..1887423 (+) 429 WP_023968417.1 biopolymer transporter ExbD -
  HKW96_RS08620 (HKW96_08620) lpxK 1887423..1888433 (+) 1011 WP_023968418.1 tetraacyldisaccharide 4'-kinase -
  HKW96_RS08625 (HKW96_08625) - 1888457..1888642 (+) 186 WP_007931663.1 Trm112 family protein -
  HKW96_RS08630 (HKW96_08630) kdsB 1888639..1889403 (+) 765 WP_023968419.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKW96_RS08635 (HKW96_08635) - 1889403..1889867 (+) 465 WP_007931667.1 low molecular weight protein-tyrosine-phosphatase -
  HKW96_RS08640 (HKW96_08640) murB 1889864..1890883 (+) 1020 WP_023968420.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 743 a.a.        Molecular weight: 81233.30 Da        Isoelectric Point: 9.7319

>NTDB_id=442536 HKW96_RS08605 WP_023968415.1 1884029..1886260(+) (comA) [Pseudomonas chlororaphis strain RP4]
MRTGMLALAAGLLSLRFLPALPAIGWLAVLPAVALMLLPFRTYPLAFFLLGLAWACVSAQWALDDRLAEPLDGQTRWLEG
QVVGLPQQAEGVLRFELEGGRARRGRIPQRLRLAWYGGPPVHSGERWRLAVKLKRPAGLVNLQAFDHEAWLLAQRIGATG
TVKDGQRLAATQESWRARIRQRLLQVDAQGRVGGLAALVLGDGSGLSREDWRVLQDTGTVHLMVISGQHISLLAAVMYAL
VAGLARYGLWPGRWPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVALVLIWRLRFRHLGAWWPFLLALNAVLLFEPL
ASLQPGFWLSFTAVAVLILIFGGRLGGWRWWQSWTRIQWLIAIGLCPVLLALGLPISLSGPLANLLAEPWISLLVLPPAL
LGTLFLAVPYLGEGLLWLAGGLLDVLFRGLALLAAQWPAWIAPAIPLWAWSICALGAFLLLLPAGVPLRPLGWPMLLLMV
FPPKDTLPYGEAEVWQLDVGQGLAVLVRTREHAMLYDAGPRFGDSDLGARVVLPSLRKLGVGRLDLMLLSHADADHAGGA
DAIQRGLPVARLVSGDPEGLPAYLPAEPCASGEQWQWDGVRFALWQWADAQNGNQKSCVMQVEAKGERLLLTGDIDALAE
RALLDTPLAVETHWLQAPHHGSRSSSSPALLKALAPSAVLISRGHGNGFGHPHPQVVERYRQQGIAIYDSAEHGALQLML
GSYTEPTSLRAQRRFWRKWPLSP

Nucleotide


Download         Length: 2232 bp        

>NTDB_id=442536 HKW96_RS08605 WP_023968415.1 1884029..1886260(+) (comA) [Pseudomonas chlororaphis strain RP4]
ATGCGCACAGGGATGCTGGCGTTGGCGGCGGGGCTTTTGAGCCTGCGCTTTTTGCCGGCGCTGCCAGCGATCGGATGGCT
GGCAGTGCTGCCGGCAGTGGCCTTGATGCTGCTGCCGTTTCGTACCTATCCATTGGCTTTTTTCCTGTTGGGCCTGGCGT
GGGCTTGCGTGAGCGCGCAATGGGCGCTGGACGATCGTTTGGCGGAACCGCTTGATGGGCAGACCCGCTGGCTCGAGGGC
CAGGTGGTGGGACTGCCGCAGCAGGCCGAGGGTGTGTTGCGTTTCGAACTGGAAGGCGGGCGGGCACGGCGCGGACGGAT
TCCCCAGCGCCTGCGCCTGGCCTGGTATGGCGGGCCGCCGGTGCACAGCGGCGAACGCTGGCGCCTGGCGGTAAAACTCA
AGCGCCCCGCCGGGCTGGTCAATCTGCAGGCCTTCGATCACGAGGCCTGGCTGCTGGCCCAGCGCATCGGCGCCACGGGC
ACGGTCAAGGATGGGCAACGGCTGGCCGCCACGCAGGAGAGCTGGCGTGCGCGCATTCGCCAACGCTTGCTGCAAGTCGA
TGCCCAGGGGCGCGTCGGTGGCCTGGCGGCCTTGGTGCTGGGTGACGGCTCGGGGCTGAGTCGGGAGGATTGGCGTGTCC
TGCAAGACACCGGGACCGTGCACCTGATGGTGATTTCCGGGCAGCACATCAGTTTGCTGGCCGCGGTGATGTATGCCCTG
GTGGCGGGGCTGGCCCGCTACGGCCTGTGGCCCGGACGTTGGCCCTGGCTGCCCTGGGCCTGTGGGCTGGCATTCGCTTC
GGCGCTGGGTTACGGGTTGCTGGCGGGCTTCGATGTGCCGGTGCGTCGTGCCTGCGTGATGGTTGCCCTGGTGCTGATCT
GGCGCCTGCGCTTTCGTCACCTGGGCGCCTGGTGGCCGTTTCTGCTGGCGTTGAATGCGGTGCTGTTGTTCGAGCCGCTG
GCCAGTCTGCAGCCAGGGTTCTGGCTGTCCTTTACCGCGGTGGCGGTGCTGATCCTGATCTTCGGCGGGCGCCTGGGAGG
CTGGCGCTGGTGGCAGTCCTGGACCCGCATCCAATGGTTGATCGCCATCGGCCTGTGCCCAGTGCTACTGGCGCTGGGGT
TGCCCATCAGCCTCAGCGGGCCGCTGGCCAATCTGCTGGCGGAACCCTGGATCAGCCTGTTGGTGCTGCCGCCGGCGTTG
CTCGGTACCTTGTTCCTGGCGGTGCCTTACCTGGGCGAAGGCTTGCTCTGGCTGGCCGGTGGTTTGCTGGATGTGCTGTT
TCGCGGTCTGGCGCTGCTGGCCGCACAATGGCCGGCCTGGATAGCGCCGGCCATACCGCTCTGGGCCTGGAGTATCTGCG
CGCTGGGGGCTTTTCTGCTGTTGCTGCCCGCTGGCGTGCCGCTGCGTCCCTTGGGATGGCCGATGCTGCTGTTGATGGTG
TTCCCGCCGAAAGACACCCTGCCATACGGCGAGGCGGAAGTCTGGCAGCTGGATGTTGGGCAGGGCCTGGCGGTGCTGGT
GCGGACTCGCGAGCACGCGATGCTGTATGACGCCGGCCCGCGTTTTGGCGATTCCGACCTGGGCGCCCGGGTGGTGCTGC
CATCGTTGCGCAAGCTGGGCGTCGGGCGTCTAGACCTGATGCTGCTCAGTCACGCCGATGCCGATCATGCCGGTGGCGCC
GACGCCATCCAGCGCGGCTTGCCGGTGGCCAGGCTGGTCAGCGGCGATCCCGAGGGCTTGCCGGCCTATTTGCCGGCAGA
ACCTTGTGCCAGCGGCGAGCAGTGGCAATGGGACGGGGTACGTTTTGCCCTGTGGCAATGGGCGGATGCGCAGAACGGTA
ACCAGAAGTCCTGCGTGATGCAGGTCGAGGCCAAGGGCGAGCGTTTGCTGCTGACGGGGGATATCGATGCCCTGGCGGAA
CGAGCGTTGCTGGATACCCCGCTGGCCGTCGAGACTCATTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGCTCGTCGTC
CCCGGCCTTGCTCAAGGCCCTCGCGCCTTCGGCGGTGCTGATTTCCCGAGGGCACGGTAATGGCTTCGGGCATCCGCACC
CGCAGGTCGTCGAGCGTTATCGCCAGCAAGGGATCGCCATTTACGACAGTGCGGAGCACGGAGCGCTGCAACTGATGCTG
GGCTCCTACACCGAACCGACGAGCCTGCGGGCGCAGCGGCGCTTTTGGCGCAAATGGCCACTATCTCCTTAA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(24-167)

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

64.673

96.77

0.626