Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   ISU84_RS24625 Genome accession   NZ_CP064103
Coordinates   5092638..5094047 (+) Length   469 a.a.
NCBI ID   WP_022646353.1    Uniprot ID   -
Organism   Escherichia coli strain IR53017     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 5087638..5099047
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ISU84_RS24610 (ISU84_24610) typA 5087798..5089621 (-) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -
  ISU84_RS24615 (ISU84_24615) glnA 5089994..5091403 (+) 1410 WP_001271717.1 glutamate--ammonia ligase -
  ISU84_RS24620 (ISU84_24620) glnL 5091577..5092626 (+) 1050 WP_000190577.1 nitrogen regulation protein NR(II) -
  ISU84_RS24625 (ISU84_24625) luxO 5092638..5094047 (+) 1410 WP_022646353.1 nitrogen regulation protein NR(I) Regulator
  ISU84_RS24630 (ISU84_24630) yshB 5094159..5094269 (+) 111 WP_000893994.1 YshB family small membrane protein -
  ISU84_RS24635 (ISU84_24635) hemN 5094498..5095871 (-) 1374 WP_001590951.1 oxygen-independent coproporphyrinogen III oxidase -
  ISU84_RS24640 (ISU84_24640) yihI 5096060..5096569 (-) 510 WP_001572146.1 Der GTPase-activating protein YihI -
  ISU84_RS28105 - 5096688..5096854 (-) 167 Protein_4899 hypothetical protein -
  ISU84_RS24645 (ISU84_24645) yihA 5097151..5097783 (+) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52261.73 Da        Isoelectric Point: 6.4081

>NTDB_id=442367 ISU84_RS24625 WP_022646353.1 5092638..5094047(+) (luxO) [Escherichia coli strain IR53017]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LAHHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESTVPESTSQMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=442367 ISU84_RS24625 WP_022646353.1 5092638..5094047(+) (luxO) [Escherichia coli strain IR53017]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGTTGGCGAGCAAAACGCCGGATGTACTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCAATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCGTTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTATCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGCGAAGCGCCAGCCATGCAGGACGTGTTCCGTATTATCGGTCGACTTTCGCGTTCT
TCCATTAGCGTGCTGATCAACGGCGAATCCGGCACTGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGCCCGCG
AGCCAAAGCGCCGTTTATCGCGCTCAATATGGCGGCTATCCCGAAGGATTTGATCGAATCAGAACTGTTTGGTCACGAGA
AAGGCGCGTTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAAGCCGATGGCGGCACGTTATTTCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTATCGCGTTGGCGGCTA
TGCACCGGTGAAAGTGGATGTGCGGATTATCGCTGCCACTCACCAGAATCTCGAACAGCGGGTGCAGGAAGGCAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTCATCCGTGTTCATCTGCCGCCGCTGCGTGAGCGTCGGGAAGATATTCCCCGT
CTGGCACACCATTTTTTACAAGTTGCTGCTCGCGAGCTGGGCGTAGAAGCAAAGTTGCTGCATCCGGAAACTGAAGCCGC
TCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGCCGCTGGCTAACGGTAATGGCTGCCGGAC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAACCGTACCGGAAAGCACTTCACAAATGCAGCCGGAC
AGTTGGGCAACGCTGTTAGCACAGTGGGCAGATCGGGCGCTACGTTCCGGTCATCAAAACTTGCTGTCTGAAGCGCAACC
AGAGTTGGAGCGGACGTTACTGACGACCGCGTTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTCGGCT
GGGGGCGTAACACTCTGACGCGGAAGTTAAAAGAGCTGGGAATGGAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(6-115)

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.655

98.934

0.392
  pilR Pseudomonas aeruginosa PAK

38.854

100

0.39