Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HMPREF1038_RS08105 Genome accession   NC_018630
Coordinates   1519475..1520071 (-) Length   198 a.a.
NCBI ID   WP_001844531.1    Uniprot ID   -
Organism   Streptococcus pneumoniae gamPNI0373     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1514475..1525071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF1038_RS08090 (HMPREF1038_01651) - 1516000..1516704 (-) 705 WP_001055246.1 TIGR02206 family membrane protein -
  HMPREF1038_RS08095 (HMPREF1038_01652) murF 1516799..1518172 (-) 1374 WP_001844533.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  HMPREF1038_RS08100 (HMPREF1038_01653) - 1518256..1519299 (-) 1044 WP_001844532.1 D-alanine--D-alanine ligase -
  HMPREF1038_RS08105 (HMPREF1038_01654) recR 1519475..1520071 (-) 597 WP_001844531.1 recombination mediator RecR Machinery gene
  HMPREF1038_RS08110 (HMPREF1038_01655) pbp2b 1520082..1522139 (-) 2058 WP_074192806.1 penicillin-binding protein 2B -
  HMPREF1038_RS08115 (HMPREF1038_01656) - 1522339..1523190 (+) 852 WP_000360333.1 MurR/RpiR family transcriptional regulator -
  HMPREF1038_RS08120 (HMPREF1038_01657) - 1523206..1524090 (-) 885 WP_000222983.1 ROK family protein -
  HMPREF1038_RS08125 (HMPREF1038_01658) - 1524108..1525025 (-) 918 WP_001281499.1 dihydrodipicolinate synthase family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21687.87 Da        Isoelectric Point: 4.6438

>NTDB_id=44226 HMPREF1038_RS08105 WP_001844531.1 1519475..1520071(-) (recR) [Streptococcus pneumoniae gamPNI0373]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMSADDVNEFAKNLLSAKRELTYCSICGRLTDDNPCSICTDPTRDQT
TILVLEDSRDVAAMENIQEYHGLYHVLHGLISPMNGISPDDINLKSLMTRLMDSEVSEVIVATNATADGEATSMYLSRLL
KPAGIKVTRLARGLAVGADIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=44226 HMPREF1038_RS08105 WP_001844531.1 1519475..1520071(-) (recR) [Streptococcus pneumoniae gamPNI0373]
ATGCTTTATCCAACACCTATTGCCAAGTTGATTGACAGTTATTCTAAGTTACCAGGTATCGGGATTAAGACGGCTACGCG
TCTGGCCTTTTATACGATTGGGATGTCTGCTGATGATGTCAATGAATTTGCAAAAAATCTCCTTTCTGCTAAGAGAGAAT
TGACATATTGTTCTATTTGTGGACGTTTGACAGACGACAATCCTTGTTCTATCTGTACTGATCCGACTCGTGACCAGACA
ACAATTTTAGTTCTTGAGGATAGTAGAGATGTGGCAGCCATGGAAAATATCCAAGAATACCATGGACTCTATCATGTCCT
TCATGGCCTCATTTCTCCTATGAATGGTATCAGTCCGGACGATATCAATCTCAAGAGCCTTATGACTCGTCTTATGGATA
GTGAGGTTTCAGAAGTGATTGTGGCGACTAATGCTACAGCGGATGGTGAAGCGACTTCCATGTATCTTTCACGTTTGCTC
AAGCCGGCTGGTATCAAGGTTACGCGTCTAGCACGAGGTCTCGCTGTGGGAGCGGACATTGAGTATGCGGACGAAGTGAC
ACTCTTACGAGCCATTGAAAATCGGACAGAGTTGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(39-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

99.495

100

0.995
  recR Bacillus subtilis subsp. subtilis str. 168

61.616

100

0.616
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.231

98.485

0.485

Multiple sequence alignment