Detailed information NTG0441972

Bioinformatically predicted

Overview

• Name: sepM
• Type: Regulator
• Locus tag: IRJ26_RS21620
• Genome accession: NZ_CP064094
• Coordinates: 4112322..4113347 (-)
• Length: 341 a.a.
• NCBI ID: WP_003245451.1
• Uniprot ID: O34470
• Organism: Bacillus subtilis strain N1108-5at
• Function: processing of CSP (predicted from homology) Competence regulation

Genomic Context

Location: 4107322..4118347

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IRJ26_RS21585	-	4107807..4108703 (-)	897	WP_003232206.1	2-dehydropantoate 2-reductase	-
IRJ26_RS21590	ylbP	4108863..4109345 (+)	483	WP_003244940.1	N-acetyltransferase	-
IRJ26_RS21595	gerR	4109402..4109983 (-)	582	WP_003232210.1	sporulation specific transcriptional regulator GerR	-
IRJ26_RS21600	rpmF	4110129..4110308 (-)	180	WP_003154457.1	50S ribosomal protein L32	-
IRJ26_RS21605	ylbN	4110330..4110848 (-)	519	WP_003232214.1	DUF177 domain-containing protein	-
IRJ26_RS21610	-	4110876..4111061 (+)	186	WP_003232215.1	hypothetical protein	-
IRJ26_RS21615	ylbM	4111058..4112305 (+)	1248	WP_003244707.1	nucleotidyltransferase	-
IRJ26_RS21620	sepM	4112322..4113347 (-)	1026	WP_003245451.1	protease DdcP	Regulator
IRJ26_RS21625	ylbK	4113349..4114131 (-)	783	WP_003232221.1	patatin family protein	-
IRJ26_RS21630	spoVV	4114312..4115538 (+)	1227	WP_003245492.1	dipicolinic acid transporter SpoVV	-
IRJ26_RS21635	coaD	4115549..4116034 (-)	486	WP_003245283.1	pantetheine-phosphate adenylyltransferase	-
IRJ26_RS21640	rsmD	4116039..4116593 (-)	555	WP_003232227.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
IRJ26_RS21645	ylbG	4116916..4117188 (-)	273	WP_009967171.1	YlbG family protein	-
IRJ26_RS21650	ylbF	4117243..4117692 (-)	450	WP_003221370.1	regulatory iron-sulfur-containing complex subunit RicF	Regulator
IRJ26_RS21655	ylbE	4117808..4118047 (-)	240	WP_003232231.1	YlbE-like family protein	-

Sequence

Protein

• Length: 341 a.a.
• Molecular weight: 37651.23 Da
• Isoelectric Point: 6.5347

>NTDB_id=441972 IRJ26_RS21620 WP_003245451.1 4112322..4113347(-) (sepM) [Bacillus subtilis strain N1108-5at]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide

• Length: 1026 bp

>NTDB_id=441972 IRJ26_RS21620 WP_003245451.1 4112322..4113347(-) (sepM) [Bacillus subtilis strain N1108-5at]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGTC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAATCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCAAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACGATTGATGTTGA
CGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

• Lon protease (S16) C-terminal proteolytic domain (Lon_C) (232-331)

• Peptidase family M50 (Peptidase_M50) (59-220)

• PDZ domain (PDZ_2) (128-195)

3D structure

• PDB: 2KJP

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
sepM	Streptococcus mutans UA159	39.143	100	0.402