Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   IRJ26_RS21650 Genome accession   NZ_CP064094
Coordinates   4117243..4117692 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain N1108-5at     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 4112243..4122692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ26_RS21620 sepM 4112322..4113347 (-) 1026 WP_003245451.1 protease DdcP Regulator
  IRJ26_RS21625 ylbK 4113349..4114131 (-) 783 WP_003232221.1 patatin family protein -
  IRJ26_RS21630 spoVV 4114312..4115538 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  IRJ26_RS21635 coaD 4115549..4116034 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  IRJ26_RS21640 rsmD 4116039..4116593 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  IRJ26_RS21645 ylbG 4116916..4117188 (-) 273 WP_009967171.1 YlbG family protein -
  IRJ26_RS21650 ylbF 4117243..4117692 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  IRJ26_RS21655 ylbE 4117808..4118047 (-) 240 WP_003232231.1 YlbE-like family protein -
  IRJ26_RS21660 ylbD 4118063..4118461 (-) 399 WP_003232233.1 YlbD family protein -
  IRJ26_RS21665 ylbC 4118693..4119733 (-) 1041 WP_003245434.1 CAP domain-containing protein -
  IRJ26_RS21670 ylbB 4119817..4120263 (-) 447 WP_003221362.1 CBS domain-containing protein -
  IRJ26_RS21675 ylbA 4120403..4120765 (+) 363 WP_003232238.1 YugN family protein -
  IRJ26_RS21680 ctaG 4120797..4121690 (-) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  IRJ26_RS21685 ctaF 4121717..4122049 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  IRJ26_RS21690 ctaE 4122052..4122675 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=441973 IRJ26_RS21650 WP_003221370.1 4117243..4117692(-) (ylbF) [Bacillus subtilis strain N1108-5at]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=441973 IRJ26_RS21650 WP_003221370.1 4117243..4117692(-) (ylbF) [Bacillus subtilis strain N1108-5at]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1