Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HKK52_RS29080 Genome accession   NZ_CP052862
Coordinates   6321764..6323998 (+) Length   744 a.a.
NCBI ID   WP_169373601.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK2     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6316764..6328998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK52_RS29055 (HKK52_29055) - 6317873..6318532 (+) 660 WP_169373596.1 transglutaminase family protein -
  HKK52_RS29060 (HKK52_29060) - 6318576..6319199 (+) 624 WP_169373597.1 glutathione S-transferase -
  HKK52_RS29065 (HKK52_29065) - 6319332..6320264 (+) 933 WP_169373598.1 ABC transporter ATP-binding protein -
  HKK52_RS29070 (HKK52_29070) - 6320261..6321040 (+) 780 WP_169373599.1 ABC transporter permease -
  HKK52_RS29075 (HKK52_29075) - 6321112..6321627 (-) 516 WP_169373600.1 DUF2062 domain-containing protein -
  HKK52_RS29080 (HKK52_29080) comA 6321764..6323998 (+) 2235 WP_169373601.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKK52_RS29085 (HKK52_29085) exbB 6324085..6324723 (+) 639 WP_169374308.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKK52_RS29090 (HKK52_29090) - 6324720..6325151 (+) 432 WP_169373602.1 biopolymer transporter ExbD -
  HKK52_RS29095 (HKK52_29095) lpxK 6325151..6326161 (+) 1011 WP_169373603.1 tetraacyldisaccharide 4'-kinase -
  HKK52_RS29100 (HKK52_29100) - 6326187..6326372 (+) 186 WP_007945752.1 Trm112 family protein -
  HKK52_RS29105 (HKK52_29105) kdsB 6326369..6327133 (+) 765 WP_169373604.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKK52_RS29110 (HKK52_29110) - 6327133..6327597 (+) 465 WP_169373605.1 low molecular weight protein-tyrosine-phosphatase -
  HKK52_RS29115 (HKK52_29115) murB 6327594..6328613 (+) 1020 WP_169373606.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 744 a.a.        Molecular weight: 81332.33 Da        Isoelectric Point: 10.0359

>NTDB_id=441927 HKK52_RS29080 WP_169373601.1 6321764..6323998(+) (comA) [Pseudomonas sp. ADAK2]
MRTGMVALALGLLALRFLPALPPVWLWLLLPVVGLMLLPFRTYPLAFFLFGFSWAGGSAQSALDDRLSAGLDGETRWVEG
RVSGLPQNNETVVRFELTDARSRHGAVPSLMRLAWYGGPPVNSGERWRLAVKLKRPTGLINPHAFDYDAWLLAQGIGATG
TVKDGRRLSPARWAWRDGIRQRLLSVDAQGRAGALAALVLGDGAGLSRDDWQVLQDTGTVHLLVISGQHIGLLAGSVYLL
IAGLARYGLWPRRWPWLPWACGLAFAAALGYGLLAGFEVPVRRACVMIALVLLWRLRFRHLGAWWPLLLAFDGVLLLDPL
ASLQPGFWLSFAAVAVLIFTFGGRLGPWRWWQTWTRAQWLIAIGLGPLLLMLGLPVSVSGPLVNLLAVPWISLLVLPPAL
VGTVLLPVPYVGEGLLWLAGGLIDLLFKGLALMANPFPAWVPVAVPLWVGAIGVLGACLLLMPRGVPLRPLGWPMLLLLV
FPPRDEVPEGLAEIWQLDVGQGLAILVRTRQHTLLYDAGPRFGDFDLGERVVLPSLRKLGINGLDLMLISHADADHAGGA
RAINEGLPVARVISGDPLALPVELHAEGCESGRQWGWDGVTFQLWQWSSASESNQKSCVLQIEANGERLLLTGDIDIHAE
RALLDSPLAQPTDWLTAPHHGSRSSSSMLLLTALQPKAVLISRGHGNSFGHPHPTVMARYRKRGLRIYDSAEHGAVRLLL
GSFEPPRTMRQQRRFWRDAPAADK

Nucleotide


Download         Length: 2235 bp        

>NTDB_id=441927 HKK52_RS29080 WP_169373601.1 6321764..6323998(+) (comA) [Pseudomonas sp. ADAK2]
ATGCGCACAGGGATGGTAGCGCTGGCGCTCGGGTTGTTGGCGCTGCGTTTTTTACCGGCATTACCGCCGGTCTGGTTATG
GCTGTTGCTGCCGGTGGTGGGTTTGATGCTGCTGCCGTTTCGCACTTATCCGCTGGCGTTTTTCCTGTTCGGCTTCAGTT
GGGCCGGCGGGAGTGCGCAGTCGGCACTGGATGATCGGCTATCGGCAGGCCTGGACGGCGAAACCCGCTGGGTGGAAGGC
CGGGTCAGCGGTTTGCCGCAAAACAACGAGACAGTGGTGCGTTTCGAATTGACGGATGCGCGTTCGCGACACGGGGCGGT
GCCGTCGCTGATGCGCCTGGCCTGGTACGGCGGACCGCCGGTCAACAGCGGCGAGCGCTGGCGCCTGGCGGTGAAGTTGA
AGCGCCCGACCGGGCTGATCAATCCCCATGCCTTCGATTACGACGCCTGGCTGCTGGCCCAGGGCATCGGCGCCACCGGC
ACGGTGAAGGATGGCCGGCGCCTTTCACCCGCCCGCTGGGCCTGGCGCGACGGCATCCGCCAGCGTTTGCTCAGTGTCGA
TGCCCAAGGGCGAGCCGGGGCATTGGCGGCGTTGGTGCTGGGCGATGGCGCCGGGTTGAGCCGCGACGACTGGCAGGTGT
TGCAAGACACCGGCACCGTGCACCTGTTGGTGATTTCCGGGCAGCACATCGGTTTGCTGGCAGGCTCGGTGTACCTGCTG
ATCGCCGGGCTGGCCCGTTATGGCCTGTGGCCGAGACGTTGGCCCTGGCTGCCGTGGGCATGTGGCCTGGCGTTCGCGGC
AGCCCTCGGTTATGGGCTGCTGGCCGGTTTCGAAGTGCCGGTGCGGCGGGCCTGCGTGATGATCGCCCTGGTGCTGTTGT
GGCGCCTGCGCTTTCGTCATCTGGGGGCGTGGTGGCCGCTGTTGCTGGCGTTTGATGGCGTGTTGCTGCTGGACCCGCTG
GCGAGTCTGCAACCGGGTTTCTGGTTGTCCTTTGCTGCTGTAGCGGTGCTGATTTTCACCTTCGGCGGTCGACTGGGTCC
GTGGCGCTGGTGGCAAACCTGGACCCGCGCCCAATGGCTGATCGCTATCGGTCTAGGCCCGCTGCTGCTGATGTTGGGGT
TGCCGGTCAGTGTCAGCGGGCCGCTGGTCAATCTGCTGGCGGTACCGTGGATCAGTCTGCTGGTATTGCCTCCAGCCTTG
GTCGGGACAGTGCTGTTGCCGGTGCCTTACGTAGGGGAAGGGTTGCTGTGGCTGGCGGGCGGTCTGATCGACTTGCTGTT
CAAGGGGCTGGCGCTGATGGCGAATCCGTTCCCCGCGTGGGTGCCGGTGGCGGTGCCATTGTGGGTCGGAGCCATCGGCG
TATTGGGCGCCTGTCTATTATTGATGCCGCGAGGCGTGCCGTTGCGCCCATTAGGTTGGCCAATGCTGTTGCTGCTGGTC
TTCCCGCCGCGCGACGAAGTGCCCGAAGGCCTGGCCGAGATCTGGCAACTGGACGTCGGCCAGGGCTTGGCGATCCTGGT
GCGCACTCGCCAACACACGCTGCTGTATGACGCCGGCCCGCGCTTCGGTGATTTCGATCTTGGCGAGCGAGTGGTCCTGC
CGTCATTACGCAAACTGGGCATAAACGGCCTCGACCTGATGCTGATCAGTCACGCCGACGCCGACCATGCTGGCGGGGCT
CGTGCAATCAATGAGGGGTTGCCGGTGGCGCGAGTGATCAGCGGCGATCCGCTGGCGCTGCCCGTCGAATTACACGCCGA
AGGCTGCGAGAGCGGTCGGCAATGGGGCTGGGATGGCGTGACGTTCCAGCTCTGGCAATGGTCCTCGGCCAGCGAAAGCA
ATCAAAAGTCCTGTGTCCTGCAGATCGAAGCCAACGGCGAACGCTTGCTGCTGACCGGCGATATCGACATACACGCCGAA
CGCGCACTGCTGGACAGCCCTTTGGCGCAGCCCACCGATTGGTTGACAGCGCCGCACCACGGCAGCCGCAGTTCCTCATC
CATGCTGCTGCTCACCGCGTTGCAACCCAAAGCCGTGCTGATCTCCCGCGGCCACGGCAATTCCTTCGGCCACCCCCATC
CCACGGTGATGGCGCGTTATCGCAAGCGTGGCCTGCGCATCTACGACAGCGCCGAGCACGGTGCCGTCCGTCTACTGCTG
GGAAGCTTCGAGCCACCGCGGACGATGCGTCAACAACGGCGCTTCTGGCGCGATGCGCCGGCGGCGGACAAATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-464)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Domain of unknown function (DUF4131) (DUF4131)

(23-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.448

96.64

0.603
  comA Ralstonia pseudosolanacearum GMI1000

33.135

100

0.375