Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   HKK53_RS29085 Genome accession   NZ_CP052861
Coordinates   6324122..6324760 (+) Length   212 a.a.
NCBI ID   WP_169374308.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6319122..6329760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK53_RS29065 (HKK53_29065) - 6319369..6320301 (+) 933 WP_169373598.1 ABC transporter ATP-binding protein -
  HKK53_RS29070 (HKK53_29070) - 6320298..6321077 (+) 780 WP_169373599.1 ABC transporter permease -
  HKK53_RS29075 (HKK53_29075) - 6321149..6321664 (-) 516 WP_169373600.1 DUF2062 domain-containing protein -
  HKK53_RS29080 (HKK53_29080) comA 6321801..6324035 (+) 2235 WP_169373601.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKK53_RS29085 (HKK53_29085) exbB 6324122..6324760 (+) 639 WP_169374308.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKK53_RS29090 (HKK53_29090) - 6324757..6325188 (+) 432 WP_169373602.1 biopolymer transporter ExbD -
  HKK53_RS29095 (HKK53_29095) lpxK 6325188..6326198 (+) 1011 WP_169373603.1 tetraacyldisaccharide 4'-kinase -
  HKK53_RS29100 (HKK53_29100) - 6326224..6326409 (+) 186 WP_007945752.1 Trm112 family protein -
  HKK53_RS29105 (HKK53_29105) kdsB 6326406..6327170 (+) 765 WP_169373604.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKK53_RS29110 (HKK53_29110) - 6327170..6327634 (+) 465 WP_169373605.1 low molecular weight protein-tyrosine-phosphatase -
  HKK53_RS29115 (HKK53_29115) murB 6327631..6328650 (+) 1020 WP_169373606.1 UDP-N-acetylmuramate dehydrogenase -
  HKK53_RS29120 (HKK53_29120) - 6328891..6329361 (+) 471 WP_169373607.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23144.35 Da        Isoelectric Point: 6.8774

>NTDB_id=441900 HKK53_RS29085 WP_169374308.1 6324122..6324760(+) (exbB) [Pseudomonas sp. ADAK7]
MWELVKSGGWMMLPIILSSIVAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRADSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMTTNAAVLAGGISKALITTA
SGLIVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKKA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=441900 HKK53_RS29085 WP_169374308.1 6324122..6324760(+) (exbB) [Pseudomonas sp. ADAK7]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTAGCCATGGCAATCGTTGC
CGAACGCCTGTGGACCCTGCGCGCCAGCCGTGTGACCCCGGAGCATTTGCTCGGGCAGGTCTGGGTCTGGATCAAAGACA
AACAACTCAATAAAGAAAAGCTCAAGGAACTGCGCGCCGACTCGCCGTTGGGCGAAATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAAGCCGCCGCCCGGGTTATCCACGAGCTGGAGCGCTACAT
CAATGCGCTGGGCACCATCGCCGCCATGGCCCCGTTGCTCGGGTTGCTCGGGACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCACGGGCATGACCACCAACGCCGCAGTGTTGGCCGGCGGTATTTCCAAAGCCTTGATCACCACGGCT
TCGGGCCTGATCGTCGGTATCCCGTCGGTATTCTTCCACCGCTTCCTGCAACGCCGGATCGATGAACTGGTGGTGGGGAT
GGAGCAGGAAGCTATCAAGCTGGTTGAGGTGGTACAGGGCGACCGTGACGTGGACCTGTCCGAGGGCAAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.81

99.057

0.83