Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HKK53_RS25195 Genome accession   NZ_CP052861
Coordinates   5483124..5484713 (-) Length   529 a.a.
NCBI ID   WP_169373018.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK7     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 5478124..5489713
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK53_RS25180 (HKK53_25180) - 5480168..5480569 (+) 402 WP_169405738.1 type IV pilin protein -
  HKK53_RS25185 (HKK53_25185) thiO 5480625..5481725 (+) 1101 WP_169373016.1 glycine oxidase ThiO -
  HKK53_RS25190 (HKK53_25190) pilR 5481781..5483121 (-) 1341 WP_169373017.1 sigma-54 dependent transcriptional regulator Regulator
  HKK53_RS25195 (HKK53_25195) pilS 5483124..5484713 (-) 1590 WP_169373018.1 ATP-binding protein Regulator
  HKK53_RS25200 (HKK53_25200) - 5484703..5484936 (-) 234 WP_169373019.1 PP0621 family protein -
  HKK53_RS25205 (HKK53_25205) - 5485062..5486084 (-) 1023 WP_169373020.1 outer membrane protein assembly factor BamD -
  HKK53_RS25210 (HKK53_25210) rluD 5486236..5487198 (+) 963 WP_007942311.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HKK53_RS25215 (HKK53_25215) pgeF 5487195..5487920 (+) 726 WP_169373021.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58648.50 Da        Isoelectric Point: 6.9390

>NTDB_id=441893 HKK53_RS25195 WP_169373018.1 5483124..5484713(-) (pilS) [Pseudomonas sp. ADAK7]
MTAEASSPGNKQAQRLLRLYHLYRLSVGITLVLLISSNMDNQLLALADNDLLRSGSWLYLVLNILLVVFLENTRRRTQLF
SLTLVDVLLLCGLFYAAGGVASAIGNLLIVSVAIGNTLLRGRIGLVIAAVAAIGIVGLSFLLSFSHPASPSDYLQAGTLG
ALCFAAALLVQGLIRRLEVSEHLAEQRASEVVGLEALNVLILQRMRTGILVLDDQRRVQLANHSALSLLGQERLDGQLID
DYSPTLVERLQLWLNNPTLRPQSLKVARSGLELQPSFIALDQSPHHQTLVFLEDLAQIAQQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLQESEELNDADRRLTQIIQDHSQRMNRVIENVLQLSRRQQTAPQRLDLKPWLAQFVEEAREAATER
QHIHLRIGLGHFTTLMDPNQLTQILDNLLRNAWRHSALTHDRAEVWLELFIDTDSQLPVLEVLDNGPGVAPDQQVHLFEP
FFTTSTQGTGLGLYLSRELCESNQARLDFKPRQGGGCFRITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=441893 HKK53_RS25195 WP_169373018.1 5483124..5484713(-) (pilS) [Pseudomonas sp. ADAK7]
GTGACCGCTGAGGCCTCCAGCCCCGGCAACAAACAGGCCCAGCGACTGCTGCGCCTCTATCATCTGTACCGTTTAAGCGT
CGGCATCACCCTGGTGTTGTTGATTTCCAGCAACATGGACAACCAGTTGCTGGCGCTCGCCGATAACGACTTGCTGCGCA
GTGGCAGCTGGTTGTACCTGGTGCTTAACATTCTGCTGGTGGTGTTCCTGGAGAACACCCGGCGCCGGACGCAGCTGTTC
AGCCTGACCCTGGTCGATGTATTGCTGTTGTGCGGCCTGTTCTACGCCGCCGGTGGTGTGGCCAGTGCCATCGGCAATCT
GCTGATCGTGTCAGTGGCCATCGGCAATACGCTATTGCGCGGACGTATTGGTTTGGTGATCGCGGCAGTCGCGGCCATCG
GCATTGTCGGTTTGAGTTTCCTGCTGAGCTTCAGCCACCCCGCCAGCCCCAGTGACTATCTGCAAGCCGGCACCCTCGGC
GCGCTGTGCTTTGCCGCGGCGTTGCTGGTGCAAGGCTTGATCCGGCGCCTGGAAGTCAGTGAGCACCTCGCCGAGCAGCG
TGCCAGCGAGGTGGTTGGCCTTGAAGCCCTCAATGTGCTGATTCTGCAACGCATGCGTACCGGCATCCTGGTGCTGGACG
ACCAGCGCCGCGTGCAACTGGCCAACCACAGTGCCCTGTCCCTGCTGGGCCAGGAACGGCTGGACGGCCAACTGATCGAT
GATTACTCGCCAACCCTGGTCGAGCGCCTGCAACTGTGGCTCAACAACCCGACCTTGCGTCCCCAGAGCTTGAAAGTCGC
CCGTTCCGGCCTGGAGCTGCAACCGAGCTTCATTGCCCTCGACCAAAGCCCGCACCATCAAACGCTGGTCTTTCTCGAAG
ACCTCGCCCAGATCGCCCAGCAGGCCCAGCAATTGAAGCTCGCCGCCCTCGGTCGCCTGACCGCCGGTATCGCCCACGAG
ATCCGCAACCCGCTGGGCGCCGTTAGTCACGCCGCGCAGTTGCTGCAGGAATCCGAGGAACTGAACGACGCGGATCGACG
TCTGACCCAGATTATCCAAGACCACTCTCAACGAATGAATCGGGTTATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAACCGCACCGCAGCGGCTCGATCTGAAGCCGTGGCTGGCGCAGTTCGTCGAAGAAGCCCGTGAGGCCGCGACCGAACGC
CAGCACATTCACCTGCGCATCGGCCTGGGCCACTTCACAACGTTGATGGACCCGAACCAACTGACCCAGATTCTCGACAA
CTTGTTGCGCAATGCCTGGCGGCACAGCGCCTTGACCCATGACAGGGCCGAGGTCTGGCTTGAGCTGTTTATCGACACCG
ACAGCCAGTTGCCGGTTCTCGAAGTGCTGGACAACGGCCCCGGCGTGGCGCCGGATCAGCAAGTGCACCTGTTCGAACCG
TTCTTCACCACCAGCACCCAAGGCACAGGCCTCGGGCTCTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCCCGCCT
AGACTTCAAACCACGCCAAGGCGGCGGCTGCTTTCGCATCACCTTTGCACACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

60.189

100

0.603