Detailed information NTG0441892

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HKK53_RS25190
• Genome accession: NZ_CP052861
• Coordinates: 5481781..5483121 (-)
• Length: 446 a.a.
• NCBI ID: WP_169373017.1
• Uniprot ID: -
• Organism: Pseudomonas sp. ADAK7
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 5476781..5488121

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HKK53_RS25175 (HKK53_25175)	-	5477045..5480152 (+)	3108	WP_169373014.1	PilC/PilY family type IV pilus protein	-
HKK53_RS25180 (HKK53_25180)	-	5480168..5480569 (+)	402	WP_169405738.1	type IV pilin protein	-
HKK53_RS25185 (HKK53_25185)	thiO	5480625..5481725 (+)	1101	WP_169373016.1	glycine oxidase ThiO	-
HKK53_RS25190 (HKK53_25190)	pilR	5481781..5483121 (-)	1341	WP_169373017.1	sigma-54 dependent transcriptional regulator	Regulator
HKK53_RS25195 (HKK53_25195)	pilS	5483124..5484713 (-)	1590	WP_169373018.1	ATP-binding protein	Regulator
HKK53_RS25200 (HKK53_25200)	-	5484703..5484936 (-)	234	WP_169373019.1	PP0621 family protein	-
HKK53_RS25205 (HKK53_25205)	-	5485062..5486084 (-)	1023	WP_169373020.1	outer membrane protein assembly factor BamD	-
HKK53_RS25210 (HKK53_25210)	rluD	5486236..5487198 (+)	963	WP_007942311.1	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	-
HKK53_RS25215 (HKK53_25215)	pgeF	5487195..5487920 (+)	726	WP_169373021.1	peptidoglycan editing factor PgeF	-

Sequence

Protein

• Length: 446 a.a.
• Molecular weight: 49600.89 Da
• Isoelectric Point: 6.7014

>NTDB_id=441892 HKK53_RS25190 WP_169373017.1 5481781..5483121(-) (pilR) [Pseudomonas sp. ADAK7]
MSPQQKVLIVDDEPDIRELLEITLGRMKLDTFSARNLGEAQALLGRETFDLCLTDMRLPDGTGLELVQHIQQRYPQVPVA
MITAYGSLETAINALKAGAFDFLTKPVDLTRLRELVTSALRLPAPGGASTAIDRRLLGDSLPMRSLRKQIDKLARSQAPV
YISGESGSGKELVARLIHEQGPRSNGPFVPVNCGAIPSELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVADL
PLAMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLDAEVSAERFRQDLYYRLNVIELRVPPLRERRDDIETLASH
VLKRLAAGTGQPAAKLHPQAVEALKSYRFPGNVRELENMLERAHTLCENKQIEASDLRLAEGNCTAEAGVPDLTRIDNLE
DYLENVERKLILQALEETRWNRTAAAQRLNLSFRSMRYRLKKLGLD

Nucleotide

• Length: 1341 bp

>NTDB_id=441892 HKK53_RS25190 WP_169373017.1 5481781..5483121(-) (pilR) [Pseudomonas sp. ADAK7]
ATGAGCCCACAGCAGAAAGTCCTGATCGTCGACGACGAACCGGATATCCGCGAACTCCTGGAAATCACCCTGGGACGGAT
GAAACTCGACACGTTCAGTGCCCGCAACCTCGGCGAAGCCCAGGCCCTGCTGGGCCGGGAGACATTCGACCTGTGCCTGA
CCGACATGCGCCTGCCCGATGGCACCGGCCTGGAGCTGGTACAACACATCCAGCAACGTTATCCGCAAGTGCCGGTGGCG
ATGATCACCGCCTATGGCAGCCTGGAAACGGCGATCAACGCCCTCAAGGCCGGCGCTTTCGACTTCCTGACCAAACCGGT
GGACCTCACCCGGCTGCGAGAATTGGTCACCAGTGCCTTGCGCCTACCGGCTCCGGGTGGCGCCAGCACCGCGATTGATC
GCCGCTTGCTCGGCGATTCACTGCCGATGCGCAGCCTGCGCAAGCAAATCGACAAACTGGCCCGCAGTCAGGCACCGGTG
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTCGCCCGCCTGATCCACGAACAAGGCCCGCGTTCGAACGGCCC
CTTCGTGCCGGTCAATTGCGGAGCGATACCGTCGGAATTGATGGAAAGTGAATTCTTCGGCCATCGCAAGGGCAGCTTCA
GCGGCGCCATCGAAGACAAGCCCGGGCTGTTCCAGGCGGCCCATGGCGGCACCCTGTTCCTCGATGAAGTGGCTGATTTA
CCACTGGCCATGCAGGTCAAGTTGCTGCGGGCGATTCAGGAGAAAGCGGTGCGCAGCGTCGGCGGGCAGCAGGAAACCGT
GGTCGATGTGCGTATCCTCTGCGCCACCCACAAGGACCTCGACGCTGAAGTCAGCGCCGAACGTTTTCGCCAGGATTTGT
ACTATCGGCTCAATGTGATCGAACTGCGGGTCCCGCCCTTGCGCGAGCGTCGGGACGATATCGAGACCCTGGCCAGCCAT
GTGCTCAAGCGTCTGGCGGCCGGCACTGGCCAACCCGCGGCAAAACTGCACCCGCAAGCCGTTGAAGCGCTGAAAAGCTA
CCGTTTCCCGGGCAATGTGCGGGAGCTGGAGAACATGCTCGAACGCGCCCACACCTTGTGTGAGAACAAACAGATCGAAG
CCAGCGACCTGCGCCTGGCCGAAGGCAACTGCACCGCTGAGGCCGGCGTGCCGGACCTGACGCGGATCGACAATCTGGAA
GATTATCTGGAAAACGTCGAACGCAAACTCATCCTCCAGGCACTGGAGGAAACCCGCTGGAATCGCACGGCGGCGGCGCA
ACGGTTGAATCTGTCGTTTCGGTCGATGCGCTATCGGCTCAAGAAATTAGGTTTGGATTGA

Domains

Predicted by InterproScan.

• Sigma-54 interaction domain (Sigma54_activat) (137-302)

• Response regulator receiver domain (Response_reg) (7-116)

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	79.91	99.327	0.794
pilR	Acinetobacter baumannii strain A118	50.215	100	0.525