Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilG   Type   Regulator
Locus tag   HKK54_RS12575 Genome accession   NZ_CP052860
Coordinates   2704741..2705148 (+) Length   135 a.a.
NCBI ID   WP_010167670.1    Uniprot ID   A0AA89WPS9
Organism   Pseudomonas sp. ADAK13     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2699741..2710148
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK54_RS12545 (HKK54_12545) - 2699889..2700893 (-) 1005 WP_010167680.1 aspartate carbamoyltransferase catalytic subunit -
  HKK54_RS12550 (HKK54_12550) pyrR 2700918..2701424 (-) 507 WP_010167678.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -
  HKK54_RS12555 (HKK54_12555) ruvX 2701497..2701934 (-) 438 WP_003213744.1 Holliday junction resolvase RuvX -
  HKK54_RS12560 (HKK54_12560) - 2701934..2702503 (-) 570 WP_010167675.1 YqgE/AlgH family protein -
  HKK54_RS12565 (HKK54_12565) - 2702571..2703470 (-) 900 WP_010167674.1 energy transducer TonB -
  HKK54_RS12570 (HKK54_12570) gshB 2703548..2704501 (-) 954 WP_010167673.1 glutathione synthase -
  HKK54_RS12575 (HKK54_12575) pilG 2704741..2705148 (+) 408 WP_010167670.1 twitching motility response regulator PilG Regulator
  HKK54_RS12580 (HKK54_12580) pilH 2705196..2705561 (+) 366 WP_010167668.1 twitching motility response regulator PilH -
  HKK54_RS12585 (HKK54_12585) - 2705574..2706098 (+) 525 WP_010167666.1 chemotaxis protein CheW -
  HKK54_RS12590 (HKK54_12590) - 2706095..2708146 (+) 2052 WP_010167664.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 14856.29 Da        Isoelectric Point: 7.3838

>NTDB_id=441866 HKK54_RS12575 WP_010167670.1 2704741..2705148(+) (pilG) [Pseudomonas sp. ADAK13]
MEQHSNALKVMVIDDSKTIRRTAETLLKNVGCDVITAIDGFDALAKIVDHHPHIIFVDIMMPRLDGYQTCALVKNNPAFK
STPVIMLSSKDGLFDKAKGRIVGSDQFLTKPFSKEELLSAIKAYVPGFAAVEQAH

Nucleotide


Download         Length: 408 bp        

>NTDB_id=441866 HKK54_RS12575 WP_010167670.1 2704741..2705148(+) (pilG) [Pseudomonas sp. ADAK13]
ATGGAACAGCATTCCAACGCCTTGAAAGTGATGGTGATCGACGATTCGAAAACGATTCGCCGCACGGCCGAAACACTGTT
GAAGAACGTAGGGTGCGACGTCATCACGGCCATCGACGGTTTCGATGCCCTGGCCAAGATTGTTGACCACCACCCGCACA
TTATCTTTGTCGACATCATGATGCCGCGCCTGGATGGCTATCAGACCTGCGCGCTGGTGAAGAACAACCCGGCGTTCAAG
TCGACCCCGGTGATCATGCTGTCGTCCAAGGATGGTCTGTTCGACAAGGCCAAGGGGCGTATCGTCGGTTCTGATCAGTT
TTTGACCAAGCCTTTCAGCAAGGAAGAACTGCTGAGCGCGATCAAGGCCTATGTGCCGGGCTTCGCCGCAGTAGAACAAG
CACACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(10-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilG Acinetobacter baumannii strain A118

72

92.593

0.667
  vicR Streptococcus mutans UA159

40.476

93.333

0.378