Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   HKK57_RS17400 Genome accession   NZ_CP052857
Coordinates   3835273..3837528 (+) Length   751 a.a.
NCBI ID   WP_237150383.1    Uniprot ID   -
Organism   Pseudomonas sp. ADAK21     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3830273..3842528
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HKK57_RS17390 (HKK57_17390) - 3831069..3833822 (-) 2754 WP_029299730.1 response regulator -
  HKK57_RS17395 (HKK57_17395) - 3834621..3835136 (-) 516 WP_029299728.1 DUF2062 domain-containing protein -
  HKK57_RS17400 (HKK57_17400) comA 3835273..3837528 (+) 2256 WP_237150383.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  HKK57_RS17405 (HKK57_17405) exbB 3837604..3838239 (+) 636 WP_029299724.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  HKK57_RS17410 (HKK57_17410) - 3838236..3838664 (+) 429 WP_029299722.1 biopolymer transporter ExbD -
  HKK57_RS17415 (HKK57_17415) lpxK 3838664..3839674 (+) 1011 WP_169390483.1 tetraacyldisaccharide 4'-kinase -
  HKK57_RS17420 (HKK57_17420) - 3839699..3839884 (+) 186 WP_003174668.1 Trm112 family protein -
  HKK57_RS17425 (HKK57_17425) kdsB 3839881..3840645 (+) 765 WP_070994651.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  HKK57_RS17430 (HKK57_17430) - 3840645..3841109 (+) 465 WP_029299713.1 low molecular weight protein-tyrosine-phosphatase -
  HKK57_RS17435 (HKK57_17435) murB 3841106..3842125 (+) 1020 WP_154906766.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 81701.18 Da        Isoelectric Point: 10.9977

>NTDB_id=441797 HKK57_RS17400 WP_237150383.1 3835273..3837528(+) (comA) [Pseudomonas sp. ADAK21]
MRTGMFALALGLLALRLLPALPPVGWLLVLPVVALMLLPFRTYPLAFFLLGLGWACFSAQRALDDRLSPALDGQTRWLEG
RVSGLAQQANGVVRFELSDSRSRQDRLPQRIRVSWQGGPAVRSGERWRLAVTLKRPAGLLNFHGFDQEAWLLAQRVGAIG
SVKDGQRLAPARHAWRDGIRQQLLAVDALGREAGLAALVLGDGSGLAAEDWRILQATGTVHLLVISGQHIGLLSGLIYAL
VAGLARYGCWPRRLPWLPWACGLAFAGALAYGVLAGFEVPVQRACVMVGLVLLWRLRFRHLGIWWPLLLALNAVLIIEPL
ASLQPGFWLSFAAVAVLVLAFGGRLGPWRAWLAWTRAQWLIAIGLFPLLLILGLPISLSAPLANLFAVPWISLLVLPLAL
AGTLLLALPWLGGGLLWLAGGALDWLFMALAMLAERVPAWMPAEVPVGYWLLSLLGALLLLMPKGIPFRLLGWPLLLLAV
FPPRESIPLGQVAVEQLDVGQGLSIVLRTRNHVLLYDAGPRLGEFDLGERVVLPALRKLGVGQVDLMLLSHADADHAGGA
AAVARGGPVKRVVGGETQGLPAFLQTQACVSGEQWEWDGVAFQLWQWADASNGNAKSCVLQVQANGERLLLTGDIDREAE
RALLATPLAVATDWLQAPHHGSRSSSSWPFVQRVAPKAVLISRGRGNSFGHPHPQVLARYRYLRSAIYDSAEQGAIRLRL
GAFQAPVMARSQRRFWRAPVIDSYQRPVPAT

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=441797 HKK57_RS17400 WP_237150383.1 3835273..3837528(+) (comA) [Pseudomonas sp. ADAK21]
ATGCGTACAGGGATGTTTGCGCTGGCGTTGGGGCTGCTGGCGTTGCGCCTGCTGCCTGCCTTGCCGCCGGTCGGTTGGTT
GCTGGTGTTGCCGGTGGTGGCGTTGATGCTGCTGCCGTTTCGAACTTATCCGCTGGCATTTTTCCTGTTGGGCCTGGGGT
GGGCCTGTTTCAGCGCGCAACGAGCCCTCGACGATCGGCTCAGCCCCGCGCTGGACGGCCAGACCCGCTGGCTGGAAGGG
CGCGTCAGCGGGCTGGCGCAGCAGGCCAATGGGGTGGTGCGCTTCGAGTTGAGCGACAGCCGGTCACGTCAGGACCGGCT
GCCCCAGCGTATTCGCGTGAGCTGGCAGGGTGGCCCCGCAGTGCGCAGCGGTGAGCGCTGGCGTTTGGCGGTGACCCTCA
AGCGTCCCGCCGGCCTACTGAATTTCCATGGCTTCGACCAGGAGGCCTGGCTGTTGGCCCAGCGTGTGGGGGCGATCGGG
TCGGTCAAGGATGGCCAGCGCCTGGCGCCGGCCCGGCATGCCTGGCGCGATGGGATCCGCCAGCAGTTGTTGGCAGTCGA
TGCCCTGGGGCGCGAAGCCGGGCTGGCTGCACTGGTGCTGGGCGACGGCTCCGGTCTGGCCGCCGAGGACTGGCGCATTT
TGCAGGCCACTGGCACCGTGCATCTATTGGTCATCTCCGGTCAACATATCGGCCTGTTGTCGGGCTTGATCTACGCCCTG
GTGGCCGGGCTGGCCCGCTACGGCTGCTGGCCCAGGCGCTTGCCCTGGCTGCCTTGGGCCTGCGGCCTGGCATTTGCCGG
GGCGCTGGCCTATGGCGTGCTGGCCGGTTTTGAAGTGCCGGTGCAGCGGGCCTGTGTAATGGTGGGGCTGGTGCTGCTGT
GGCGCTTGCGGTTTCGCCATCTGGGGATCTGGTGGCCACTACTGCTGGCCCTGAATGCGGTGTTGATCATCGAACCGCTG
GCCAGCCTGCAACCGGGGTTTTGGCTGTCGTTTGCCGCCGTGGCCGTGTTGGTGCTGGCCTTCGGCGGCCGCCTGGGGCC
ATGGCGCGCCTGGCTTGCCTGGACCCGTGCCCAATGGCTGATCGCTATTGGTCTGTTCCCGCTGCTGCTGATCCTCGGCT
TGCCTATCAGCTTGAGCGCGCCGCTGGCCAATCTGTTTGCCGTGCCGTGGATCAGCCTGCTGGTGCTGCCGTTGGCGCTG
GCGGGCACGCTGTTGCTGGCGCTGCCGTGGCTGGGCGGCGGCCTGCTGTGGCTGGCGGGTGGCGCACTGGATTGGCTGTT
CATGGCCCTGGCCATGCTGGCCGAGCGCGTACCGGCCTGGATGCCTGCCGAGGTGCCCGTTGGCTACTGGTTGCTGAGCC
TGCTGGGGGCACTGCTGTTATTGATGCCCAAGGGCATTCCCTTTCGCCTGCTGGGTTGGCCCCTGTTGCTGCTGGCGGTG
TTCCCGCCCCGCGAATCGATCCCGTTGGGGCAGGTAGCGGTGGAGCAACTGGATGTCGGCCAGGGCCTGTCGATAGTGCT
GCGCACCCGCAACCACGTGCTGTTGTATGACGCCGGTCCGCGGCTTGGGGAGTTCGACCTCGGTGAGCGCGTGGTACTGC
CGGCGCTGCGCAAGCTGGGGGTTGGCCAAGTGGACTTGATGCTGCTCAGTCACGCCGACGCCGACCATGCCGGGGGCGCT
GCGGCGGTTGCGCGGGGGGGGCCGGTCAAGCGGGTGGTGGGCGGGGAAACCCAGGGCCTGCCAGCGTTCCTCCAGACCCA
GGCCTGTGTCAGCGGTGAGCAATGGGAATGGGACGGTGTGGCGTTCCAACTGTGGCAATGGGCGGATGCCAGCAACGGCA
ATGCGAAGTCCTGCGTGCTGCAAGTCCAGGCCAATGGTGAGCGCCTGCTGCTGACCGGCGATATAGACCGCGAGGCCGAG
CGGGCCTTGCTCGCCACGCCCCTGGCGGTCGCCACCGATTGGCTGCAAGCGCCCCATCATGGCAGTCGCAGTTCCTCGTC
ATGGCCGTTCGTCCAGCGAGTCGCCCCCAAGGCCGTGTTGATCTCCCGCGGGCGTGGCAACTCCTTTGGCCATCCGCACC
CGCAAGTACTGGCGCGTTACCGGTATTTGCGCAGCGCCATTTATGACAGCGCCGAGCAGGGCGCCATCCGCCTGCGCCTG
GGGGCTTTCCAGGCGCCGGTCATGGCACGCAGCCAGCGTCGTTTCTGGCGCGCGCCTGTCATTGACAGTTACCAAAGGCC
GGTGCCTGCGACATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-661)

Domain of unknown function (DUF4131) (DUF4131)

(20-167)

Competence protein (Competence)

(198-462)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

60.167

95.606

0.575
  comA Ralstonia pseudosolanacearum GMI1000

34.788

100

0.361