Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | HKJ33_RS03545 | Genome accession | NZ_CP052853 |
| Coordinates | 782707..783153 (-) | Length | 148 a.a. |
| NCBI ID | WP_021358633.1 | Uniprot ID | - |
| Organism | Xylella fastidiosa subsp. multiplex strain RH1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 773489..800287 | 782707..783153 | within | 0 |
Gene organization within MGE regions
Location: 773489..800287
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HKJ33_RS03490 (HKJ33_03585) | - | 773531..774115 (+) | 585 | WP_004083991.1 | alpha-ketoglutarate-dependent dioxygenase AlkB | - |
| HKJ33_RS03495 (HKJ33_03590) | - | 774310..774951 (-) | 642 | WP_004083987.1 | ABC-type transport auxiliary lipoprotein family protein | - |
| HKJ33_RS03500 (HKJ33_03595) | - | 774948..775874 (-) | 927 | WP_004083985.1 | MlaD family protein | - |
| HKJ33_RS03505 (HKJ33_03600) | - | 775878..776708 (-) | 831 | WP_004083974.1 | ABC transporter ATP-binding protein | - |
| HKJ33_RS03510 (HKJ33_03605) | - | 776714..777832 (-) | 1119 | WP_004083972.1 | ABC transporter permease | - |
| HKJ33_RS03515 (HKJ33_03610) | - | 777942..779204 (+) | 1263 | WP_012337721.1 | threonine/serine exporter family protein | - |
| HKJ33_RS03520 (HKJ33_03620) | - | 779845..780051 (+) | 207 | WP_071869858.1 | hypothetical protein | - |
| HKJ33_RS03525 (HKJ33_03625) | - | 780115..780327 (+) | 213 | WP_228304324.1 | hypothetical protein | - |
| HKJ33_RS03530 (HKJ33_03630) | - | 780391..780600 (+) | 210 | WP_225621843.1 | hypothetical protein | - |
| HKJ33_RS03535 (HKJ33_03635) | - | 781241..782413 (-) | 1173 | WP_004083967.1 | integrase | - |
| HKJ33_RS03540 (HKJ33_03640) | - | 782413..782685 (-) | 273 | WP_004083966.1 | hypothetical protein | - |
| HKJ33_RS03545 (HKJ33_03645) | ssb | 782707..783153 (-) | 447 | WP_021358633.1 | single-stranded DNA-binding protein | Machinery gene |
| HKJ33_RS03550 (HKJ33_03650) | - | 783137..783607 (-) | 471 | WP_076613218.1 | DUF5131 family protein | - |
| HKJ33_RS03555 (HKJ33_03655) | - | 783600..783830 (-) | 231 | WP_021358635.1 | hypothetical protein | - |
| HKJ33_RS03560 (HKJ33_03660) | - | 783830..784363 (-) | 534 | WP_004083962.1 | hypothetical protein | - |
| HKJ33_RS03565 (HKJ33_03665) | - | 784360..784953 (-) | 594 | WP_004083960.1 | DapH/DapD/GlmU-related protein | - |
| HKJ33_RS03570 (HKJ33_03670) | - | 785046..785579 (-) | 534 | WP_012337723.1 | pilin | - |
| HKJ33_RS03575 (HKJ33_03675) | - | 785712..785978 (-) | 267 | WP_004084112.1 | hypothetical protein | - |
| HKJ33_RS03580 (HKJ33_03680) | - | 785975..786253 (-) | 279 | WP_004083957.1 | hypothetical protein | - |
| HKJ33_RS03585 (HKJ33_03685) | - | 786250..786471 (-) | 222 | WP_021358638.1 | hypothetical protein | - |
| HKJ33_RS03590 (HKJ33_03690) | - | 786468..786926 (-) | 459 | WP_004084109.1 | hypothetical protein | - |
| HKJ33_RS03595 (HKJ33_03695) | - | 786923..787387 (-) | 465 | WP_021358639.1 | DUF1566 domain-containing protein | - |
| HKJ33_RS03600 (HKJ33_03700) | - | 787384..787881 (-) | 498 | WP_021358640.1 | hypothetical protein | - |
| HKJ33_RS03605 (HKJ33_03705) | - | 787871..788494 (+) | 624 | WP_004083954.1 | hypothetical protein | - |
| HKJ33_RS03610 (HKJ33_03710) | - | 788596..788997 (-) | 402 | WP_004084104.1 | hypothetical protein | - |
| HKJ33_RS03615 (HKJ33_03715) | - | 788996..789484 (+) | 489 | WP_238836475.1 | CHC2 zinc finger domain-containing protein | - |
| HKJ33_RS03620 (HKJ33_03720) | - | 789420..790064 (+) | 645 | WP_228762222.1 | terminase gpA endonuclease subunit | - |
| HKJ33_RS03625 (HKJ33_03725) | - | 790141..790377 (+) | 237 | WP_012337727.1 | hypothetical protein | - |
| HKJ33_RS03630 (HKJ33_03730) | - | 790374..790889 (+) | 516 | WP_004083947.1 | phage portal protein | - |
| HKJ33_RS12435 | - | 791054..791296 (+) | 243 | WP_228762223.1 | hypothetical protein | - |
| HKJ33_RS12915 | - | 791310..791432 (+) | 123 | WP_324187556.1 | hypothetical protein | - |
| HKJ33_RS12440 | - | 791423..791560 (+) | 138 | WP_249328067.1 | hypothetical protein | - |
| HKJ33_RS03640 (HKJ33_03740) | - | 791570..791851 (+) | 282 | WP_249328068.1 | hypothetical protein | - |
| HKJ33_RS03645 (HKJ33_03745) | - | 791848..792084 (+) | 237 | WP_004083943.1 | hypothetical protein | - |
| HKJ33_RS03650 (HKJ33_03750) | - | 792074..794899 (+) | 2826 | WP_169709956.1 | phage tail protein | - |
| HKJ33_RS03655 (HKJ33_03755) | - | 794892..795404 (+) | 513 | WP_169709957.1 | hypothetical protein | - |
| HKJ33_RS03660 (HKJ33_03760) | - | 795408..795827 (+) | 420 | WP_004083636.1 | hypothetical protein | - |
| HKJ33_RS03665 (HKJ33_03765) | - | 795927..796598 (+) | 672 | WP_249328069.1 | hypothetical protein | - |
| HKJ33_RS12820 | - | 796658..796786 (-) | 129 | WP_256704593.1 | hypothetical protein | - |
| HKJ33_RS03675 (HKJ33_03775) | - | 796834..796941 (+) | 108 | Protein_717 | DNA adenine methylase | - |
| HKJ33_RS03680 (HKJ33_03780) | - | 796993..797619 (+) | 627 | WP_038230952.1 | IS607 family transposase | - |
| HKJ33_RS03685 (HKJ33_03785) | - | 797613..798809 (+) | 1197 | WP_004083925.1 | RNA-guided endonuclease TnpB family protein | - |
| HKJ33_RS03690 (HKJ33_03790) | - | 798816..799520 (+) | 705 | WP_154123795.1 | DNA adenine methylase | - |
| HKJ33_RS03695 (HKJ33_03795) | - | 799723..800040 (-) | 318 | WP_004084245.1 | BrnA antitoxin family protein | - |
| HKJ33_RS03700 (HKJ33_03800) | - | 800000..800287 (-) | 288 | WP_004083921.1 | BrnT family toxin | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 16536.38 Da Isoelectric Point: 6.4871
>NTDB_id=441708 HKJ33_RS03545 WP_021358633.1 782707..783153(-) (ssb) [Xylella fastidiosa subsp. multiplex strain RH1]
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSGRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGQDGQERYVTEIIADQMHMLGGRGEGSSGITPQRQPAKVRNNDKAYAYAGDDFHDDDIPF
MARGINKVILVGNLGNEPDIKYTQSGMTITSISLATSSGRKDREGNTQERTEWHRVKFFGKLGEIAAEYLHKGSQCYIEG
TIRYDKFTGQDGQERYVTEIIADQMHMLGGRGEGSSGITPQRQPAKVRNNDKAYAYAGDDFHDDDIPF
Nucleotide
Download Length: 447 bp
>NTDB_id=441708 HKJ33_RS03545 WP_021358633.1 782707..783153(-) (ssb) [Xylella fastidiosa subsp. multiplex strain RH1]
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGCAACCTGGGGAACGAACCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAGCATTAGCCTAGCGACCAGCAGCGGACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTTGGCGAGATTGCCGCCGAATATCTGCATAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAGTTCACCGGCCAGGACGGTCAGGAGCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGTGAAGGCTCCAGCGGTATCACGCCACAGCGGCAACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
ATGGCACGCGGAATTAACAAGGTGATCCTAGTCGGCAACCTGGGGAACGAACCGGATATCAAATACACCCAAAGCGGCAT
GACGATCACCAGCATTAGCCTAGCGACCAGCAGCGGACGCAAGGACAGAGAGGGCAATACCCAGGAGCGGACCGAATGGC
ACCGCGTCAAGTTTTTCGGAAAGCTTGGCGAGATTGCCGCCGAATATCTGCATAAGGGATCGCAGTGCTACATAGAGGGC
ACCATCCGTTACGACAAGTTCACCGGCCAGGACGGTCAGGAGCGTTATGTCACTGAGATTATTGCTGACCAAATGCACAT
GCTCGGCGGTCGCGGTGAAGGCTCCAGCGGTATCACGCCACAGCGGCAACCGGCAAAGGTCCGTAACAACGATAAAGCCT
ATGCGTATGCAGGCGACGACTTCCACGATGACGACATCCCGTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
41.477 |
100 |
0.493 |
| ssb | Neisseria meningitidis MC58 |
38.728 |
100 |
0.453 |
| ssb | Neisseria gonorrhoeae MS11 |
38.728 |
100 |
0.453 |
| ssb | Glaesserella parasuis strain SC1401 |
41.304 |
93.243 |
0.385 |