Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   IRJ22_RS09885 Genome accession   NZ_CP064092
Coordinates   1871733..1872482 (-) Length   249 a.a.
NCBI ID   WP_003184052.1    Uniprot ID   -
Organism   Bacillus licheniformis strain C5     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1866733..1877482
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS09860 mreC 1867006..1867914 (-) 909 WP_003184040.1 rod shape-determining protein MreC -
  IRJ22_RS09865 - 1867945..1868955 (-) 1011 WP_003184042.1 rod shape-determining protein -
  IRJ22_RS09870 ysxA/radC 1869043..1869717 (-) 675 WP_003184045.1 RadC family protein Machinery gene
  IRJ22_RS09875 - 1869772..1870344 (-) 573 WP_003184048.1 Maf family protein -
  IRJ22_RS09880 - 1870498..1871529 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  IRJ22_RS09885 comC 1871733..1872482 (-) 750 WP_003184052.1 prepilin peptidase Machinery gene
  IRJ22_RS09890 - 1872625..1873923 (-) 1299 WP_009329287.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -
  IRJ22_RS09895 - 1874005..1876647 (-) 2643 WP_124932247.1 valine--tRNA ligase -
  IRJ22_RS09900 - 1877108..1877299 (+) 192 WP_003184058.1 hypothetical protein -

Sequence

Protein


Download         Length: 249 a.a.        Molecular weight: 26944.49 Da        Isoelectric Point: 8.7373

>NTDB_id=441602 IRJ22_RS09885 WP_003184052.1 1871733..1872482(-) (comC) [Bacillus licheniformis strain C5]
MFIFYLFTAGLVLGSFFNSAGRRISEKISLIAPRSLCRVCKRQLGFSELIPVLSYLMQRGRCKGCQTPLSIVYPAVELSA
AILFAFAGMHVGHEGELVIVLALISLLLIVFVSDVTHMIIPDAVLCFFLPVFAVGRFLVPLEQWHSSLSGAMAGGMLPLL
TLLLTKGGIGWGDVKLFAVIGMALGSRLLVLAFFLSAAAGTVLGLIALLAGKLKKNEPMPFAPAILAGTLTSCFYGEPMI
EWYLQTAWW

Nucleotide


Download         Length: 750 bp        

>NTDB_id=441602 IRJ22_RS09885 WP_003184052.1 1871733..1872482(-) (comC) [Bacillus licheniformis strain C5]
ATGTTCATCTTTTACCTTTTTACGGCAGGTTTAGTGCTCGGCTCTTTTTTTAATTCGGCCGGGCGCCGCATTTCTGAAAA
GATATCATTGATTGCTCCGCGTTCCCTCTGCCGCGTCTGCAAAAGGCAGCTGGGCTTCTCGGAGCTGATACCGGTTTTGT
CCTATTTGATGCAGCGGGGGAGGTGCAAAGGATGTCAAACCCCGCTCTCGATCGTGTATCCGGCAGTTGAGCTCTCCGCC
GCCATCCTGTTTGCGTTTGCCGGCATGCACGTTGGGCATGAGGGGGAGCTGGTGATTGTGCTTGCTCTTATATCTCTGCT
TTTGATCGTCTTTGTATCTGATGTGACACACATGATCATTCCGGATGCTGTTCTTTGTTTTTTCCTGCCTGTCTTTGCCG
TCGGACGATTCCTTGTTCCTCTGGAACAGTGGCACTCAAGTTTGAGCGGTGCGATGGCCGGCGGTATGCTGCCCCTCTTG
ACGCTGCTTTTGACGAAAGGGGGGATCGGCTGGGGAGACGTAAAGCTGTTTGCGGTAATCGGCATGGCGCTCGGCAGCCG
CCTCCTCGTTCTCGCTTTTTTCCTCTCGGCAGCCGCAGGAACGGTGCTTGGTCTTATTGCACTCCTGGCAGGCAAACTGA
AGAAAAATGAACCAATGCCGTTTGCTCCCGCGATTCTGGCCGGGACGCTGACGAGCTGCTTCTATGGCGAACCAATGATC
GAGTGGTACCTTCAAACGGCATGGTGGTGA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(102-205)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(9-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

47.934

97.189

0.466