Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   IRJ22_RS09870 Genome accession   NZ_CP064092
Coordinates   1869043..1869717 (-) Length   224 a.a.
NCBI ID   WP_003184045.1    Uniprot ID   Q65GL3
Organism   Bacillus licheniformis strain C5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1864043..1874717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IRJ22_RS09835 - 1864151..1864582 (+) 432 WP_369878943.1 SRPBCC family protein -
  IRJ22_RS09840 - 1864582..1864902 (+) 321 WP_003184034.1 ArsR/SmtB family transcription factor -
  IRJ22_RS09845 minD 1864947..1865753 (-) 807 WP_003184035.1 septum site-determining protein MinD -
  IRJ22_RS09850 minC 1865756..1866436 (-) 681 WP_011198163.1 septum site-determining protein MinC -
  IRJ22_RS09855 mreD 1866491..1867009 (-) 519 WP_003184039.1 rod shape-determining protein MreD -
  IRJ22_RS09860 mreC 1867006..1867914 (-) 909 WP_003184040.1 rod shape-determining protein MreC -
  IRJ22_RS09865 - 1867945..1868955 (-) 1011 WP_003184042.1 rod shape-determining protein -
  IRJ22_RS09870 ysxA/radC 1869043..1869717 (-) 675 WP_003184045.1 RadC family protein Machinery gene
  IRJ22_RS09875 - 1869772..1870344 (-) 573 WP_003184048.1 Maf family protein -
  IRJ22_RS09880 - 1870498..1871529 (-) 1032 WP_003184050.1 SPOR domain-containing protein -
  IRJ22_RS09885 comC 1871733..1872482 (-) 750 WP_003184052.1 prepilin peptidase Machinery gene
  IRJ22_RS09890 - 1872625..1873923 (-) 1299 WP_009329287.1 bifunctional folylpolyglutamate synthase/dihydrofolate synthase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 25239.11 Da        Isoelectric Point: 8.3107

>NTDB_id=441601 IRJ22_RS09870 WP_003184045.1 1869043..1869717(-) (ysxA/radC) [Bacillus licheniformis strain C5]
MKLKDFPDEERPRERLLNTGAESLSNHELLAILLRTGTKKESVLQLSSRLLQTFDGLRLLKEASAEELSSISGIGRAKAV
QILAALELGRRIHSLACKDRYVIRFPEDAANFLMGDMRFLSQEHFVCVYLNTKNQVIHKRTVFIGSLNSSIVHPREVFKE
ALKRSAASFICVHNHPSGDPAPSREDIEVTQRLHESGQLLGIELLDHIIIGDQKFVSLKEKGYL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=441601 IRJ22_RS09870 WP_003184045.1 1869043..1869717(-) (ysxA/radC) [Bacillus licheniformis strain C5]
TTGAAATTAAAAGATTTTCCTGATGAAGAAAGGCCAAGGGAGCGCCTTCTCAACACAGGCGCCGAAAGTTTGTCAAACCA
TGAACTGCTTGCGATACTGCTCAGAACCGGTACGAAAAAAGAATCGGTTCTTCAGCTTTCAAGCCGGCTGCTTCAAACGT
TTGACGGCCTCCGTTTGTTAAAAGAAGCATCCGCCGAGGAGCTTTCAAGCATTTCCGGGATCGGCCGCGCAAAAGCCGTG
CAGATTTTGGCGGCCCTTGAGCTTGGCCGGCGCATTCACAGTCTGGCTTGCAAAGACCGTTATGTGATTCGTTTTCCCGA
AGATGCGGCCAATTTTTTAATGGGGGATATGCGCTTTCTCTCTCAGGAGCACTTCGTATGTGTGTATCTGAACACGAAAA
ACCAGGTGATCCACAAGCGCACGGTTTTTATAGGGAGCCTGAACTCTTCAATCGTCCATCCGAGGGAAGTGTTTAAAGAA
GCTTTAAAGCGCTCCGCAGCTTCATTCATCTGCGTCCACAATCATCCGTCCGGAGATCCGGCTCCAAGCCGCGAAGACAT
AGAAGTTACACAGCGCCTTCACGAGTCCGGACAGCTGCTCGGAATCGAATTGCTCGATCATATCATCATCGGTGATCAAA
AATTTGTGAGCTTAAAAGAAAAAGGATATTTGTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(4-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q65GL3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

80.804

100

0.808
  radC Streptococcus pneumoniae TIGR4

46.667

93.75

0.438
  radC Streptococcus pneumoniae R6

46.19

93.75

0.433
  radC Streptococcus pneumoniae D39

46.19

93.75

0.433
  radC Streptococcus gordonii str. Challis substr. CH1

44.762

93.75

0.42