Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   B739_RS09320 Genome accession   NC_018609
Coordinates   1970904..1971512 (-) Length   202 a.a.
NCBI ID   WP_014938738.1    Uniprot ID   -
Organism   Riemerella anatipestifer RA-CH-1     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1965904..1976512
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  B739_RS09300 (B739_1881) - 1966130..1967458 (+) 1329 WP_014938734.1 pitrilysin family protein -
  B739_RS09305 (B739_1882) - 1967455..1969497 (+) 2043 WP_014938735.1 pitrilysin family protein -
  B739_RS09310 (B739_1883) secG 1969639..1970001 (+) 363 WP_013446734.1 preprotein translocase subunit SecG -
  B739_RS09315 (B739_1884) - 1970040..1970897 (-) 858 WP_014938737.1 glycosyltransferase family 2 protein -
  B739_RS09320 (B739_1885) recR 1970904..1971512 (-) 609 WP_014938738.1 recombination mediator RecR Machinery gene
  B739_RS11490 - 1971615..1973564 (-) 1950 WP_310485635.1 PKD domain-containing protein -
  B739_RS11570 (B739_1887) - 1974789..1976057 (-) 1269 Protein_1826 S8 family serine peptidase -

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 22438.78 Da        Isoelectric Point: 4.9948

>NTDB_id=44154 B739_RS09320 WP_014938738.1 1970904..1971512(-) (recR) [Riemerella anatipestifer RA-CH-1]
MNFPSKVLEKAVEEISGLPGIGRKSALRLALHLLRQPSSQGLALGEAIQNLVTEIKYCKECHNFSDTDICEICADDSRHA
ELLCVVEDVRDVMAIENTGKFKGKYLVLGGKISPMEGIGPQQLNIETLESKLEIGEIEEVIFALSATMEGDTTVYYLYKK
FKHFDIKFSNIARGISVGDELEYADEVSLGRSILNRIPYKGH

Nucleotide


Download         Length: 609 bp        

>NTDB_id=44154 B739_RS09320 WP_014938738.1 1970904..1971512(-) (recR) [Riemerella anatipestifer RA-CH-1]
ATGAATTTTCCAAGTAAGGTTTTAGAAAAGGCAGTAGAAGAAATATCGGGACTTCCAGGGATAGGTAGAAAATCAGCTCT
TAGGTTAGCTCTTCATTTGCTTAGACAACCTAGTTCACAAGGGCTAGCTCTAGGTGAGGCTATACAAAATCTAGTTACAG
AGATAAAATACTGTAAAGAATGCCATAACTTTTCGGACACAGATATTTGCGAAATTTGTGCAGATGACAGTAGACACGCT
GAACTCCTATGCGTTGTGGAAGATGTGAGAGATGTAATGGCGATAGAAAATACAGGGAAATTCAAAGGGAAATATTTGGT
TCTAGGAGGGAAAATATCACCTATGGAAGGCATTGGTCCTCAACAATTAAATATAGAAACCCTAGAAAGCAAACTAGAAA
TAGGGGAGATAGAGGAGGTTATTTTTGCACTATCTGCCACTATGGAGGGCGATACCACCGTGTATTATTTGTATAAAAAG
TTTAAGCATTTTGACATTAAATTCTCCAATATTGCAAGAGGGATTTCCGTAGGAGATGAACTAGAGTACGCCGATGAAGT
TTCTTTGGGGAGGTCTATTTTGAACCGAATACCTTATAAAGGTCATTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-171)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

41.837

97.03

0.406
  recR Streptococcus pneumoniae R6

41.206

98.515

0.406
  recR Bacillus subtilis subsp. subtilis str. 168

39.286

97.03

0.381

Multiple sequence alignment