Detailed information NTG0441496

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: IPZ77_RS17415
• Genome accession: NZ_CP064057
• Coordinates: 3802450..3803463 (-)
• Length: 337 a.a.
• NCBI ID: WP_030736161.1
• Uniprot ID: -
• Organism: Streptomyces sp. XC 2026
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3797450..3808463

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
IPZ77_RS17380 (IPZ77_17385)	-	3797705..3798214 (+)	510	WP_316251332.1	methylated-DNA--[protein]-cysteine S-methyltransferase	-
IPZ77_RS17385 (IPZ77_17390)	-	3798295..3798963 (+)	669	WP_234389835.1	TetR/AcrR family transcriptional regulator	-
IPZ77_RS17390 (IPZ77_17395)	-	3799016..3799471 (-)	456	WP_234389836.1	hypothetical protein	-
IPZ77_RS17395 (IPZ77_17400)	-	3799549..3800184 (-)	636	WP_200366548.1	GAP family protein	-
IPZ77_RS17405 (IPZ77_17410)	-	3800535..3801842 (+)	1308	WP_200366549.1	L-fuconate dehydratase	-
IPZ77_RS17410 (IPZ77_17415)	-	3801950..3802348 (+)	399	WP_200366550.1	NUDIX domain-containing protein	-
IPZ77_RS17415 (IPZ77_17420)	rpoS	3802450..3803463 (-)	1014	WP_030736161.1	sigma-70 family RNA polymerase sigma factor	Regulator
IPZ77_RS17420 (IPZ77_17425)	-	3803948..3805138 (+)	1191	WP_234389837.1	M6 family metalloprotease domain-containing protein	-
IPZ77_RS17425 (IPZ77_17430)	-	3805219..3806718 (+)	1500	WP_200366553.1	FtsW/RodA/SpoVE family cell cycle protein	-
IPZ77_RS17430 (IPZ77_17435)	-	3806715..3807938 (+)	1224	WP_200366554.1	M20 family metallopeptidase	-

Sequence

Protein

• Length: 337 a.a.
• Molecular weight: 37356.06 Da
• Isoelectric Point: 4.8324

>NTDB_id=441496 IPZ77_RS17415 WP_030736161.1 3802450..3803463(-) (rpoS) [Streptomyces sp. XC 2026]
MATRAVARRKDTVEGAESTGSVRSSAGGDATERDLVGMYLDEIARTPLLDAAKEVELSLAIEAGLFAERLLNGEEPPVTQ
GPAADITHDELEAIVAAGERAKDVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYSKGFKFSTYATWW
IRQAITRSIADQSRTIRLPVHLVEELGRIRRVQREFNREQGREPEPSEVAAELGSTPERVQDVLDWARDPVSLNMSVDDE
GETQFGDLLEDTSAASPEQSVLVMLRREGLEDLIGRLDQRTAAIIRARYGIEDGRERTLTEVGKQHGLTRERIRQIEKHA
LLELKKMASDSGFDAAA

Nucleotide

• Length: 1014 bp

>NTDB_id=441496 IPZ77_RS17415 WP_030736161.1 3802450..3803463(-) (rpoS) [Streptomyces sp. XC 2026]
ATGGCAACCCGTGCCGTCGCCCGACGTAAGGACACCGTGGAGGGTGCCGAGTCGACGGGCAGTGTCCGGTCCAGTGCAGG
CGGCGATGCCACCGAGCGCGATCTCGTGGGGATGTATCTCGATGAGATCGCCCGCACCCCGCTGCTGGACGCGGCGAAAG
AGGTCGAGCTGTCCCTCGCGATCGAGGCGGGGCTGTTCGCGGAGCGTCTGCTGAACGGCGAGGAACCGCCGGTGACCCAG
GGGCCCGCCGCCGACATCACCCACGACGAGCTCGAGGCGATCGTGGCAGCCGGCGAACGTGCCAAGGACGTCTTCATCCG
CTCCAACCTGCGCCTGGTGGTCGCCGTCGCACGGCGCTACCCGCGCAGCGGCCTGCCGCTGCTCGACCTGATCCAGGAGG
GCAACGCCGGCCTGGTGCGGGCGGTGGAGAAGTTCGACTACAGCAAGGGCTTCAAGTTCTCGACGTACGCGACCTGGTGG
ATCCGGCAGGCCATCACCCGCTCGATCGCCGACCAGTCGCGCACCATCCGGCTGCCCGTCCACCTGGTGGAGGAGCTGGG
CCGGATCCGGCGCGTGCAGCGGGAGTTCAACCGCGAGCAGGGCCGGGAGCCGGAGCCCTCGGAGGTGGCGGCCGAGCTGG
GCTCCACACCCGAGCGGGTCCAGGACGTCCTGGACTGGGCGCGCGACCCGGTCTCGCTGAACATGTCGGTGGACGACGAG
GGCGAGACCCAGTTCGGCGACCTGCTGGAGGACACCTCGGCGGCATCGCCCGAGCAGTCCGTGCTGGTGATGCTGCGCCG
CGAGGGTCTGGAGGACCTGATCGGACGCCTCGACCAGCGGACCGCGGCCATCATCCGCGCCCGCTACGGCATCGAGGACG
GCCGTGAACGGACGCTGACGGAGGTCGGCAAGCAGCACGGCCTCACCCGTGAGCGCATCCGGCAGATAGAGAAGCACGCC
CTGCTGGAGCTGAAGAAGATGGCCAGCGACTCCGGATTCGACGCCGCCGCGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 2 (Sigma70_r2) (105-174)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (34-67)

• Sigma-70 region 3 (Sigma70_r3) (184-260)

• Sigma-70, region 4 (Sigma70_r4) (274-326)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	38.769	96.439	0.374