Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK/comK1   Type   Regulator
Locus tag   SAMSHR1132_RS04575 Genome accession   NC_016941
Coordinates   978756..979325 (-) Length   189 a.a.
NCBI ID   WP_000287261.1    Uniprot ID   A0A7U7JTQ7
Organism   Staphylococcus argenteus     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 973756..984325
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMSHR1132_RS04555 (SAMSHR1132_08700) - 975258..976616 (+) 1359 WP_000021861.1 TrkH family potassium uptake protein -
  SAMSHR1132_RS04560 (SAMSHR1132_08710) - 976755..978263 (+) 1509 WP_000425704.1 bifunctional UDP-sugar hydrolase/5'-nucleotidase -
  SAMSHR1132_RS04575 (SAMSHR1132_08720) comK/comK1 978756..979325 (-) 570 WP_000287261.1 competence protein ComK Regulator
  SAMSHR1132_RS04580 (SAMSHR1132_08730) - 979535..979753 (+) 219 WP_000876831.1 IDEAL domain-containing protein -
  SAMSHR1132_RS04585 (SAMSHR1132_08740) - 979834..980820 (-) 987 WP_000668810.1 lipoate--protein ligase -
  SAMSHR1132_RS04590 (SAMSHR1132_08750) - 981015..981191 (+) 177 WP_000214898.1 YkvS family protein -
  SAMSHR1132_RS04595 (SAMSHR1132_08760) - 981206..981808 (+) 603 WP_001033872.1 type II CAAX prenyl endopeptidase Rce1 family protein -
  SAMSHR1132_RS14415 - 982122..982184 (+) 63 WP_231561937.1 putative holin-like toxin -
  SAMSHR1132_RS04605 (SAMSHR1132_08780) - 982822..983106 (+) 285 WP_000790904.1 lactococcin 972 family bacteriocin -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22637.86 Da        Isoelectric Point: 9.6092

>NTDB_id=44149 SAMSHR1132_RS04575 WP_000287261.1 978756..979325(-) (comK/comK1) [Staphylococcus argenteus]
MYSQNIYVIRKGDMVIRPAFDDDDQRNGSEIIRFDKTRIQNPFKVQKIIERSCKFYGNTYLGKKAETNRITGISSKPPIL
LTPLFPTYFFPTHSDRQHENIWLNMHYIENIKELKNRKCKVTFINNESIILHVSYHSLWHQYNNSIFYYYMVDKQSRMVS
KNPDQPIDYNKATLNVFEALTRYSLFEDK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=44149 SAMSHR1132_RS04575 WP_000287261.1 978756..979325(-) (comK/comK1) [Staphylococcus argenteus]
ATGTATTCTCAAAATATTTATGTGATACGCAAAGGAGACATGGTTATTCGACCAGCATTTGATGATGATGATCAAAGAAA
TGGTAGTGAAATTATCCGGTTTGATAAAACGCGTATACAAAATCCATTTAAAGTCCAGAAAATCATAGAACGCTCTTGCA
AATTTTATGGTAATACATACCTTGGCAAGAAAGCAGAAACAAACCGCATTACTGGCATTTCTAGTAAACCACCTATTTTA
CTAACACCCTTATTTCCAACTTATTTTTTCCCAACTCATTCTGACAGACAACACGAAAACATTTGGCTAAATATGCATTA
TATAGAAAATATTAAAGAATTAAAAAATCGTAAATGTAAAGTAACTTTTATTAATAACGAATCAATTATTCTTCATGTTT
CATACCACAGTTTATGGCATCAATATAACAATTCCATTTTTTACTACTATATGGTAGATAAACAATCTCGTATGGTTTCT
AAAAATCCCGATCAACCTATAGATTATAATAAAGCCACATTAAACGTATTTGAAGCATTAACACGTTATTCCCTATTCGA
AGATAAATAA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(5-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7U7JTQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK/comK1 Staphylococcus aureus MW2

98.413

100

0.984
  comK/comK1 Staphylococcus aureus N315

98.413

100

0.984

Multiple sequence alignment