Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   HHK01_RS09725 Genome accession   NZ_CP052135
Coordinates   1976762..1977553 (-) Length   263 a.a.
NCBI ID   WP_170007607.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 1971762..1982553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS09705 yqiS 1972371..1973270 (-) 900 WP_228027741.1 phosphate butyryltransferase -
  HHK01_RS09710 - 1973413..1975455 (-) 2043 WP_170007604.1 sigma-54-dependent Fis family transcriptional regulator -
  HHK01_RS09715 - 1975658..1975909 (+) 252 WP_170007605.1 DUF2627 domain-containing protein -
  HHK01_RS09720 - 1975956..1976699 (-) 744 WP_170007606.1 glycerophosphodiester phosphodiesterase -
  HHK01_RS09725 spo0A 1976762..1977553 (-) 792 WP_170007607.1 sporulation transcription factor Spo0A Regulator
  HHK01_RS09730 spoIVB 1977837..1979117 (-) 1281 WP_170007608.1 SpoIVB peptidase -
  HHK01_RS09735 recN 1979295..1980977 (-) 1683 WP_170007609.1 DNA repair protein RecN Machinery gene
  HHK01_RS09740 ahrC 1980993..1981445 (-) 453 WP_170007610.1 transcriptional regulator AhrC/ArgR -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 29552.20 Da        Isoelectric Point: 6.1609

>NTDB_id=441445 HHK01_RS09725 WP_170007607.1 1976762..1977553(-) (spo0A) [Bacillus fonticola strain CS13]
MKKIKVCIVDDNRELVSLLEEYIQEQDDMDVVGIARNGQECLALLENTEPDVLVLDIIMPHLDGLAVLQKMRDQGIRFPH
VVMLTAFGQEDVTKKAVELGASYFVLKPFDMDNLTNIIRQMGGAQSPQPKKMSGSMRHSFQPEPREYNLDASITSIIHEI
GVPAHIKGYLYLREAISMVFNDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNIESISSLFGYTVSMTK
AKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 792 bp        

>NTDB_id=441445 HHK01_RS09725 WP_170007607.1 1976762..1977553(-) (spo0A) [Bacillus fonticola strain CS13]
GTGAAGAAAATCAAGGTATGTATAGTGGATGATAACCGAGAGCTCGTTTCATTACTAGAAGAATATATTCAAGAACAAGA
CGATATGGACGTTGTAGGAATTGCTCGTAACGGACAAGAGTGTCTTGCTTTATTAGAAAATACTGAGCCAGACGTGCTCG
TATTAGATATCATTATGCCACATCTTGATGGACTGGCAGTATTACAAAAAATGCGCGATCAAGGAATTCGCTTTCCACAC
GTTGTAATGCTGACGGCGTTTGGTCAAGAGGACGTGACGAAAAAAGCAGTAGAGCTAGGTGCGTCTTATTTTGTTTTAAA
GCCTTTTGATATGGACAATTTGACCAACATTATTCGGCAAATGGGAGGAGCGCAATCTCCGCAGCCGAAAAAAATGTCAG
GCTCCATGAGACATTCCTTTCAACCAGAGCCGCGTGAATACAATTTGGACGCAAGTATTACAAGTATTATTCATGAGATT
GGTGTGCCAGCACACATAAAAGGATACTTATATTTACGTGAAGCCATTTCTATGGTTTTCAACGATATCGAATTATTAGG
CTCTATTACAAAAGTGCTATACCCAGACATTGCCAAGAAATACAACACTACGGCAAGTCGGGTCGAGCGTGCTATTCGTC
ACGCCATAGAGGTAGCGTGGAGTCGTGGAAACATTGAGTCTATCTCTTCCCTCTTCGGTTATACGGTGAGCATGACGAAA
GCAAAACCGACCAATTCAGAATTTATCGCAATGGTCGCTGACAAGCTTCGCCTTGAGCACAAAGCATCTTGA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(153-256)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

77.528

100

0.787