Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   SAMSHR1132_RS02555 Genome accession   NC_016941
Coordinates   553160..553729 (+) Length   189 a.a.
NCBI ID   WP_000817291.1    Uniprot ID   -
Organism   Staphylococcus argenteus     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 548160..558729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SAMSHR1132_RS02530 (SAMSHR1132_04730) cysE 549373..550020 (+) 648 WP_014373785.1 serine O-acetyltransferase -
  SAMSHR1132_RS02535 (SAMSHR1132_04740) cysS 550004..551404 (+) 1401 WP_000631959.1 cysteine--tRNA ligase -
  SAMSHR1132_RS02540 (SAMSHR1132_04750) - 551397..551801 (+) 405 WP_000370188.1 Mini-ribonuclease 3 -
  SAMSHR1132_RS02545 (SAMSHR1132_04760) rlmB 551809..552555 (+) 747 WP_000390335.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  SAMSHR1132_RS02550 (SAMSHR1132_04770) - 552555..553079 (+) 525 WP_000664733.1 NYN domain-containing protein -
  SAMSHR1132_RS02555 (SAMSHR1132_04780) sigH 553160..553729 (+) 570 WP_000817291.1 sigma-70 family RNA polymerase sigma factor Regulator
  SAMSHR1132_RS13705 (SAMSHR1132_04781) rpmG 553845..553988 (+) 144 WP_014373786.1 50S ribosomal protein L33 -
  SAMSHR1132_RS02560 (SAMSHR1132_04790) secE 554044..554226 (+) 183 WP_001074473.1 preprotein translocase subunit SecE -
  SAMSHR1132_RS02565 (SAMSHR1132_04800) nusG 554239..554787 (+) 549 WP_001288299.1 transcription termination/antitermination protein NusG -
  SAMSHR1132_RS02570 (SAMSHR1132_04810) rplK 554968..555390 (+) 423 WP_001085792.1 50S ribosomal protein L11 -
  SAMSHR1132_RS02575 (SAMSHR1132_04820) rplA 555598..556290 (+) 693 WP_001074615.1 50S ribosomal protein L1 -
  SAMSHR1132_RS02580 (SAMSHR1132_04830) rplJ 556562..557062 (+) 501 WP_001273087.1 50S ribosomal protein L10 -
  SAMSHR1132_RS02585 (SAMSHR1132_04840) rplL 557106..557474 (+) 369 WP_001273586.1 50S ribosomal protein L7/L12 -
  SAMSHR1132_RS02590 (SAMSHR1132_04850) - 557662..558270 (+) 609 WP_000020309.1 class I SAM-dependent methyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 22975.95 Da        Isoelectric Point: 9.6566

>NTDB_id=44143 SAMSHR1132_RS02555 WP_000817291.1 553160..553729(+) (sigH) [Staphylococcus argenteus]
MKRCISVHNNVGKHSNIVDDNEFEKLITDLKPLIIRRMKRFGFKYHDLEDLYQEILIKIYRATKTFDFKGEQPFVNYVQC
LITSVKYDYLRKCLASSRRMDSLVNEYKVIYPCALKYHDIERNYLNKLNVRELICQFKYLSAFEKEVMYFICDQYKPREI
AQLMNVKEKTIYNAIQRCKSKIRQHFKMY

Nucleotide


Download         Length: 570 bp        

>NTDB_id=44143 SAMSHR1132_RS02555 WP_000817291.1 553160..553729(+) (sigH) [Staphylococcus argenteus]
TTGAAAAGATGTATATCAGTACATAATAATGTTGGAAAACACAGCAATATAGTTGACGATAATGAATTTGAAAAGTTAAT
TACAGATTTGAAACCATTAATCATTCGACGTATGAAAAGGTTTGGTTTTAAATACCATGATTTGGAAGATTTATATCAAG
AGATACTAATAAAGATATATAGGGCAACTAAAACATTCGATTTTAAAGGTGAGCAACCATTCGTGAATTATGTTCAATGT
TTAATCACTTCAGTTAAATACGATTACCTAAGGAAGTGTTTAGCATCTTCTAGAAGAATGGATAGTTTAGTAAATGAATA
TAAAGTTATATATCCTTGTGCATTAAAGTATCATGACATTGAAAGAAACTATTTAAATAAACTGAATGTCAGAGAGTTGA
TTTGTCAATTTAAATATTTAAGTGCATTTGAAAAAGAAGTAATGTATTTTATATGCGACCAATATAAACCAAGAGAGATT
GCCCAATTGATGAATGTTAAAGAAAAAACTATTTATAATGCAATTCAACGGTGTAAAAGTAAAATAAGACAGCATTTTAA
AATGTATTAA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus N315

69.149

99.471

0.688
  sigH Staphylococcus aureus MW2

68.085

99.471

0.677

Multiple sequence alignment