Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HHK01_RS00225 Genome accession   NZ_CP052135
Coordinates   47093..48466 (+) Length   457 a.a.
NCBI ID   WP_170005883.1    Uniprot ID   -
Organism   Bacillus fonticola strain CS13     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 42093..53466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHK01_RS00205 - 42195..42671 (+) 477 WP_170005879.1 CtsR family transcriptional regulator -
  HHK01_RS00210 - 42677..43231 (+) 555 WP_170005880.1 UvrB/UvrC motif-containing protein -
  HHK01_RS00215 - 43231..44301 (+) 1071 WP_170005881.1 protein arginine kinase -
  HHK01_RS00220 clpC 44315..46759 (+) 2445 WP_170005882.1 ATP-dependent protease ATP-binding subunit ClpC Regulator
  HHK01_RS00225 radA 47093..48466 (+) 1374 WP_170005883.1 DNA repair protein RadA Machinery gene
  HHK01_RS00230 disA 48518..49561 (+) 1044 WP_170008591.1 DNA integrity scanning diadenylate cyclase DisA -
  HHK01_RS00235 - 49962..51056 (+) 1095 WP_170005884.1 PIN/TRAM domain-containing protein -
  HHK01_RS00240 ispD 51122..51838 (+) 717 WP_322619375.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  HHK01_RS00245 ispF 51844..52320 (+) 477 WP_170008593.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 49838.27 Da        Isoelectric Point: 6.8719

>NTDB_id=441427 HHK01_RS00225 WP_170005883.1 47093..48466(+) (radA) [Bacillus fonticola strain CS13]
MAKKKSVYVCGSCGYESPKWMGRCPGCGEWNTMIEEKQMTGSGRKGAFQPAATSYQTKPTPLKDVETIQEARLHTGIGEL
DRVLGGGIVPGSLVLIGGDPGIGKSTLLLQVSAQLTNQQQRVLYISGEESMKQTKLRAHRLEMPTDELIVYSETNLHEVI
ETIAEINPSFVVVDSIQTMFHPEVTSAPGSVSQVRECTSELMRIAKTKAIAIFIVGHVTKEGAIAGPRLLEHMVDTVLYF
EGERHHSYRMVRAVKNRFGSTNEMGIFDMKESGLHEVENPSEIFLEERSTGASGSTVVASMEGTRPLLVEIQALVSPTSL
TNARRMATGIDHSRVTLLMAVLEKRVGLLLQNQDAYLKAAGGVKLDEPAIDLAVAVSIASSFQDTPTQPHDCFIGEVGLT
GEIRRVSRIEGRLNEAYKLGFRRVIMPKNNLDGIRIPDGLRCVGVSTVKEALQAAFS

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=441427 HHK01_RS00225 WP_170005883.1 47093..48466(+) (radA) [Bacillus fonticola strain CS13]
ATGGCAAAAAAGAAATCAGTGTATGTGTGTGGGTCTTGTGGGTATGAGTCCCCGAAATGGATGGGGCGTTGTCCAGGGTG
TGGGGAATGGAATACGATGATCGAAGAGAAACAAATGACCGGTAGTGGACGTAAGGGCGCATTCCAACCGGCTGCTACTA
GTTATCAAACAAAACCGACACCATTAAAAGATGTGGAAACCATTCAGGAAGCACGACTCCATACCGGAATAGGTGAGTTA
GACCGTGTATTAGGTGGGGGTATTGTCCCAGGGTCGCTTGTTTTGATTGGCGGTGACCCCGGAATCGGAAAGTCAACGCT
TCTTCTTCAAGTGAGCGCCCAGTTAACGAACCAACAGCAACGGGTTTTGTACATTTCTGGAGAGGAATCTATGAAACAAA
CAAAACTTCGGGCCCATCGACTCGAGATGCCTACAGATGAGCTGATCGTATACAGTGAAACGAATTTGCATGAAGTGATC
GAGACGATAGCAGAGATCAATCCATCTTTTGTCGTCGTAGATTCCATACAAACGATGTTCCACCCGGAAGTCACCTCAGC
ACCAGGTAGTGTTTCACAAGTGCGAGAATGTACATCGGAATTAATGCGTATTGCCAAAACAAAAGCGATTGCGATTTTCA
TCGTCGGACACGTGACAAAAGAAGGTGCTATCGCAGGACCGAGATTGCTTGAGCATATGGTTGATACGGTGTTGTATTTT
GAGGGAGAACGCCACCATTCTTACCGGATGGTACGCGCGGTAAAAAACCGCTTCGGTTCCACAAATGAGATGGGTATTTT
TGATATGAAAGAAAGTGGTCTTCATGAAGTGGAAAACCCCTCAGAAATCTTTTTGGAAGAGCGATCAACGGGGGCATCTG
GTTCTACTGTGGTTGCTTCGATGGAAGGGACTAGGCCGTTACTCGTCGAAATCCAGGCGCTTGTTTCTCCTACCTCACTG
ACCAATGCTCGGCGGATGGCAACAGGAATTGATCACAGTCGGGTCACTCTATTGATGGCTGTTTTGGAAAAGCGAGTTGG
CTTGCTTTTACAAAATCAAGATGCCTACTTAAAGGCTGCAGGTGGTGTGAAGTTAGATGAACCAGCAATTGACTTAGCCG
TTGCCGTGAGTATTGCATCAAGCTTTCAAGACACACCAACACAGCCACATGATTGCTTTATTGGTGAAGTCGGTCTTACT
GGTGAGATACGGCGCGTGTCACGTATTGAAGGACGACTTAATGAGGCGTATAAATTAGGGTTTCGTCGGGTCATTATGCC
GAAGAATAATTTGGATGGAATTCGTATCCCAGACGGATTACGTTGTGTCGGGGTATCCACGGTGAAAGAGGCGTTACAAG
CAGCCTTTAGTTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(68-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(364-430)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

70.678

100

0.707
  radA Streptococcus pneumoniae Rx1

62.144

100

0.621
  radA Streptococcus pneumoniae D39

62.144

100

0.621
  radA Streptococcus pneumoniae R6

62.144

100

0.621
  radA Streptococcus pneumoniae TIGR4

62.144

100

0.621
  radA Streptococcus mitis NCTC 12261

62.144

100

0.621
  radA Streptococcus mitis SK321

62.144

100

0.621