Detailed information NTG0441301

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: HIN86_RS20485
• Genome accession: NZ_CP051875
• Coordinates: 3704656..3705516 (+)
• Length: 286 a.a.
• NCBI ID: WP_031999398.1
• Uniprot ID: -
• Organism: Acinetobacter baumannii strain Ab-B004d-c
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3699656..3710516

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HIN86_RS17920 (HIN86_17920)	secG	3700261..3700590 (-)	330	WP_000555570.1	preprotein translocase subunit SecG	-
HIN86_RS17925 (HIN86_17925)	tpiA	3700603..3701397 (-)	795	WP_000016939.1	triose-phosphate isomerase	-
HIN86_RS17930 (HIN86_17930)	pilB	3701688..3703400 (+)	1713	WP_002058663.1	type IV-A pilus assembly ATPase PilB	Machinery gene
HIN86_RS17935 (HIN86_17935)	pilC	3703430..3704656 (+)	1227	WP_031999397.1	type II secretion system F family protein	Machinery gene
HIN86_RS20485 (HIN86_17940)	pilD	3704656..3705516 (+)	861	WP_031999398.1	prepilin peptidase	Machinery gene
HIN86_RS17945 (HIN86_17945)	coaE	3705518..3706114 (+)	597	WP_000874125.1	dephospho-CoA kinase	-
HIN86_RS17950 (HIN86_17950)	-	3706111..3707025 (-)	915	WP_000075011.1	DMT family transporter	-
HIN86_RS17955 (HIN86_17955)	rlmB	3707061..3707810 (-)	750	WP_001118149.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
HIN86_RS17960 (HIN86_17960)	-	3707912..3708238 (-)	327	WP_000099685.1	pyrimidine/purine nucleoside phosphorylase	-
HIN86_RS17965 (HIN86_17965)	-	3708315..3709625 (-)	1311	WP_031999399.1	tetratricopeptide repeat protein	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 32125.53 Da
• Isoelectric Point: 7.1041

>NTDB_id=441301 HIN86_RS20485 WP_031999398.1 3704656..3705516(+) (pilD) [Acinetobacter baumannii strain Ab-B004d-c]
MQDIIAYFIQNLTALYIAVALVSLCIGSFLNVVIYRTPKMMEQDWQQECQMLLNPEQPIIDHERLTLNKPASSCPACQQP
IRWYQNIPVISWLVLRGKCGHCQHPISIRYPAIELLTMLCSLVVVMVFGPTIQMLFGLILTWVLIALTFIDFDTQLLPDR
FTLPLAALGLGINTFNIYTSPNSAIWGYLIGFLCLWIVYYLFKVITGKEGMGYGDFKLLAALGAWMGPLMLPLIVLLSSL
LGAIIGIILLKLRNDNQPFAFGPYIAIAGWVAFLWGDQIMKIYLGG

Nucleotide

• Length: 861 bp

>NTDB_id=441301 HIN86_RS20485 WP_031999398.1 3704656..3705516(+) (pilD) [Acinetobacter baumannii strain Ab-B004d-c]
ATGCAAGACATCATTGCGTATTTTATTCAAAACTTAACTGCACTTTATATTGCTGTTGCACTCGTGAGCCTATGTATCGG
TAGCTTTCTTAATGTAGTGATTTACCGCACGCCAAAAATGATGGAACAAGATTGGCAGCAAGAATGCCAAATGCTGCTCA
ATCCCGAGCAACCGATTATTGATCATGAGAGGTTAACTTTAAATAAGCCTGCTTCATCGTGCCCTGCATGTCAGCAACCG
ATCCGTTGGTATCAAAATATTCCTGTTATAAGCTGGCTTGTGTTAAGAGGAAAATGTGGCCATTGCCAACACCCGATCAG
TATTCGCTATCCAGCCATCGAACTACTCACCATGCTATGTTCATTAGTAGTCGTCATGGTGTTTGGCCCAACCATACAAA
TGCTTTTTGGACTCATCCTCACATGGGTACTGATAGCCCTTACCTTTATTGATTTCGATACACAATTATTGCCTGATCGC
TTTACCCTACCTTTAGCTGCGCTCGGCTTAGGTATTAATACCTTTAATATTTATACCTCACCCAACTCAGCCATTTGGGG
TTATCTCATTGGTTTCCTATGTCTTTGGATTGTCTATTACTTATTTAAAGTGATCACTGGCAAAGAAGGTATGGGCTACG
GCGACTTTAAATTGCTTGCAGCATTAGGAGCATGGATGGGGCCATTGATGCTGCCGTTAATTGTGTTATTGTCATCGTTA
CTTGGCGCAATCATTGGCATCATTTTATTAAAATTAAGAAATGACAATCAGCCTTTTGCTTTTGGGCCATATATTGCCAT
TGCTGGTTGGGTTGCCTTTTTATGGGGTGATCAGATTATGAAAATTTATTTGGGAGGTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-128)

• Type IV leader peptidase family (Peptidase_A24) (138-247)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	99.65	100	0.997
pilD	Acinetobacter nosocomialis M2	97.902	100	0.979
pilD	Vibrio cholerae strain A1552	53.309	95.105	0.507
pilD	Vibrio campbellii strain DS40M4	52.399	94.755	0.497
pilD	Neisseria gonorrhoeae MS11	48.106	92.308	0.444