Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   HIN86_RS11080 Genome accession   NZ_CP051875
Coordinates   2286930..2287310 (-) Length   126 a.a.
NCBI ID   WP_000836907.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-B004d-c     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2281930..2292310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN86_RS11050 (HIN86_11050) tadA 2282049..2282552 (-) 504 WP_000033177.1 tRNA adenosine(34) deaminase TadA -
  HIN86_RS11055 (HIN86_11055) - 2282559..2283683 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  HIN86_RS11060 (HIN86_11060) ung 2283680..2284393 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  HIN86_RS11065 (HIN86_11065) - 2284444..2285040 (-) 597 WP_032000522.1 6-pyruvoyl trahydropterin synthase family protein -
  HIN86_RS11070 (HIN86_11070) gspK 2285270..2286229 (-) 960 WP_032000521.1 type II secretion system minor pseudopilin GspK -
  HIN86_RS11075 (HIN86_11075) xcpW 2286229..2286930 (-) 702 WP_032000520.1 type II secretion system minor pseudopilin GspJ Machinery gene
  HIN86_RS11080 (HIN86_11080) xcpV 2286930..2287310 (-) 381 WP_000836907.1 type II secretion system minor pseudopilin GspI Machinery gene
  HIN86_RS11085 (HIN86_11085) - 2287300..2287854 (-) 555 WP_000841373.1 type II secretion system protein -
  HIN86_RS11090 (HIN86_11090) - 2287864..2288472 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  HIN86_RS11095 (HIN86_11095) - 2288510..2289283 (-) 774 WP_000497298.1 TatD family hydrolase -
  HIN86_RS11100 (HIN86_11100) - 2289301..2289642 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  HIN86_RS11105 (HIN86_11105) - 2289654..2290634 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  HIN86_RS11110 (HIN86_11110) kdsB 2290646..2291407 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13989.27 Da        Isoelectric Point: 10.0060

>NTDB_id=441278 HIN86_RS11080 WP_000836907.1 2286930..2287310(-) (xcpV) [Acinetobacter baumannii strain Ab-B004d-c]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEIKQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=441278 HIN86_RS11080 WP_000836907.1 2286930..2287310(-) (xcpV) [Acinetobacter baumannii strain Ab-B004d-c]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAAACAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

99.206

100

0.992