Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   HIN88_RS10090 Genome accession   NZ_CP051866
Coordinates   2142275..2142655 (-) Length   126 a.a.
NCBI ID   WP_000836911.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-C63     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2137275..2147655
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN88_RS10060 (HIN88_10060) tadA 2137393..2137897 (-) 505 Protein_1952 tRNA adenosine(34) deaminase TadA -
  HIN88_RS10065 (HIN88_10065) - 2137904..2139028 (-) 1125 WP_001983908.1 enoyl-CoA hydratase/isomerase family protein -
  HIN88_RS10070 (HIN88_10070) ung 2139025..2139738 (-) 714 WP_001177528.1 uracil-DNA glycosylase -
  HIN88_RS10075 (HIN88_10075) - 2139789..2140385 (-) 597 WP_000908453.1 6-pyruvoyl trahydropterin synthase family protein -
  HIN88_RS10080 (HIN88_10080) gspK 2140615..2141574 (-) 960 WP_064194333.1 type II secretion system minor pseudopilin GspK -
  HIN88_RS10085 (HIN88_10085) xcpW 2141574..2142275 (-) 702 WP_004747380.1 type II secretion system minor pseudopilin GspJ Machinery gene
  HIN88_RS10090 (HIN88_10090) xcpV 2142275..2142655 (-) 381 WP_000836911.1 type II secretion system minor pseudopilin GspI Machinery gene
  HIN88_RS10095 (HIN88_10095) - 2142645..2143199 (-) 555 WP_000841373.1 type II secretion system protein -
  HIN88_RS10100 (HIN88_10100) - 2143209..2143817 (-) 609 WP_000375838.1 TetR/AcrR family transcriptional regulator -
  HIN88_RS10105 (HIN88_10105) - 2143855..2144628 (-) 774 WP_064192512.1 TatD family hydrolase -
  HIN88_RS10110 (HIN88_10110) - 2144646..2144987 (-) 342 WP_001183024.1 PilZ domain-containing protein -
  HIN88_RS10115 (HIN88_10115) - 2144999..2145979 (-) 981 WP_001075416.1 DNA polymerase III subunit delta' -
  HIN88_RS10120 (HIN88_10120) kdsB 2145991..2146752 (-) 762 WP_000680697.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13975.20 Da        Isoelectric Point: 9.8004

>NTDB_id=441184 HIN88_RS10090 WP_000836911.1 2142275..2142655(-) (xcpV) [Acinetobacter baumannii strain Ab-C63]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=441184 HIN88_RS10090 WP_000836911.1 2142275..2142655(-) (xcpV) [Acinetobacter baumannii strain Ab-C63]
ATGAAATCTAAAGGCTTTACCCTTTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAGTTTGTGGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACTCAAAGTAAGCAGGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACAATTAGCCCAAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTTTTTTTTAATTATCCAGTGAAAGCAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(42-101)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

100

100

1