Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   HIN89_RS16075 Genome accession   NZ_CP051862
Coordinates   3377626..3378099 (-) Length   157 a.a.
NCBI ID   WP_169041019.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab-C102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3372626..3383099
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN89_RS16060 (HIN89_16065) pilX 3375255..3376073 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HIN89_RS16065 (HIN89_16070) pilW 3376070..3377071 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  HIN89_RS16070 (HIN89_16075) pilV 3377072..3377632 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HIN89_RS16075 (HIN89_16080) fimU 3377626..3378099 (-) 474 WP_169041019.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HIN89_RS16080 (HIN89_16085) ispH 3378269..3379219 (-) 951 WP_169041020.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HIN89_RS16085 (HIN89_16090) gmk 3379342..3379971 (+) 630 WP_000015937.1 guanylate kinase -
  HIN89_RS16090 (HIN89_16095) rpoZ 3380044..3380322 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HIN89_RS16095 (HIN89_16100) - 3380361..3380491 (+) 131 Protein_3140 hypothetical protein -
  HIN89_RS16100 (HIN89_16105) - 3380531..3382636 (+) 2106 WP_001117590.1 RelA/SpoT family protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 16865.48 Da        Isoelectric Point: 8.5355

>NTDB_id=441153 HIN89_RS16075 WP_169041019.1 3377626..3378099(-) (fimU) [Acinetobacter baumannii strain Ab-C102]
MRGIIPQEGFTLVELMVTIAVMAIIALMAAPSMSNLLESKRLDANQRDLINTLSEAKSQAILGRQNVSVNLNSTASNTPT
SLNWQTASNNTLELKNIAADGTQSSLTTTTLAFNVNGVVANITQDTLLSICNSRINKKKVIILTKLGTLVFKAEETC

Nucleotide


Download         Length: 474 bp        

>NTDB_id=441153 HIN89_RS16075 WP_169041019.1 3377626..3378099(-) (fimU) [Acinetobacter baumannii strain Ab-C102]
ATGAGGGGAATTATTCCGCAAGAAGGGTTCACCTTGGTCGAGCTAATGGTGACGATTGCGGTCATGGCTATTATTGCACT
GATGGCTGCGCCATCAATGTCAAATTTATTAGAAAGTAAACGTTTAGATGCTAATCAAAGAGACTTAATCAACACTTTAT
CAGAAGCGAAAAGTCAGGCAATTTTAGGCCGTCAGAATGTTTCTGTTAACTTGAACTCAACAGCTTCAAATACACCCACT
TCATTAAATTGGCAGACAGCTTCTAATAATACTCTTGAGCTAAAAAATATAGCCGCTGATGGTACGCAAAGTTCTTTAAC
GACTACCACTTTAGCTTTTAATGTAAATGGAGTAGTGGCAAATATAACTCAAGATACGCTTTTATCTATTTGTAATTCTA
GAATAAATAAAAAGAAAGTCATTATTTTGACCAAGCTTGGCACTTTAGTTTTTAAGGCCGAGGAGACTTGTTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)

Type II transport protein GspH (GspH)

(47-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

99.363

100

0.994