Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   HIN89_RS16060 Genome accession   NZ_CP051862
Coordinates   3375255..3376073 (-) Length   272 a.a.
NCBI ID   WP_000149376.1    Uniprot ID   A0A009TDY3
Organism   Acinetobacter baumannii strain Ab-C102     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3370255..3381073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIN89_RS16045 (HIN89_16050) pilE 3370472..3370897 (-) 426 WP_000788337.1 type IV pilin protein Machinery gene
  HIN89_RS16050 (HIN89_16055) pilY2 3370894..3371376 (-) 483 WP_001046423.1 type IV pilin protein Machinery gene
  HIN89_RS16055 (HIN89_16060) pilY1 3371389..3375243 (-) 3855 WP_198054632.1 PilC/PilY family type IV pilus protein Machinery gene
  HIN89_RS16060 (HIN89_16065) pilX 3375255..3376073 (-) 819 WP_000149376.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HIN89_RS16065 (HIN89_16070) pilW 3376070..3377071 (-) 1002 WP_000079197.1 PilW family protein Machinery gene
  HIN89_RS16070 (HIN89_16075) pilV 3377072..3377632 (-) 561 WP_002194578.1 type IV pilus modification protein PilV Machinery gene
  HIN89_RS16075 (HIN89_16080) fimU 3377626..3378099 (-) 474 WP_169041019.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HIN89_RS16080 (HIN89_16085) ispH 3378269..3379219 (-) 951 WP_169041020.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  HIN89_RS16085 (HIN89_16090) gmk 3379342..3379971 (+) 630 WP_000015937.1 guanylate kinase -
  HIN89_RS16090 (HIN89_16095) rpoZ 3380044..3380322 (+) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  HIN89_RS16095 (HIN89_16100) - 3380361..3380491 (+) 131 Protein_3140 hypothetical protein -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 28858.69 Da        Isoelectric Point: 5.2557

>NTDB_id=441150 HIN89_RS16060 WP_000149376.1 3375255..3376073(-) (pilX) [Acinetobacter baumannii strain Ab-C102]
MTHLNYKNIKGRSKETGATLIVVLIILLIVISVGVLAIRVAIVSLKVATNSQVGQLNFQSSDTPLELIVQMNPTTLTNIT
NVIGAALKAHESNPGAEYNFCYKPTSTSVSFAQTRGASLLRAGSANNAVVEDGGVAGFCDLTSDYGSNRQAVVTQVAVSI
PTDAMADIPGSNLPRDINLSEGTQLPKSMLSTQRIRVITTAFLPAYASTSLETLQSDCLSTSSAKISDNFDSALTDKQTL
ADCLANYNVPFSTQVQEFNYTNKLTEITAPGS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=441150 HIN89_RS16060 WP_000149376.1 3375255..3376073(-) (pilX) [Acinetobacter baumannii strain Ab-C102]
ATGACCCATTTAAATTATAAAAATATTAAAGGTCGATCTAAGGAAACGGGTGCCACACTTATTGTTGTACTTATTATTTT
ATTGATTGTTATTTCTGTCGGGGTTTTGGCAATAAGAGTAGCGATTGTTTCTCTAAAAGTTGCAACTAATAGCCAAGTTG
GCCAATTAAACTTTCAATCTTCAGATACTCCGTTAGAGCTTATTGTACAGATGAACCCAACCACATTGACAAATATTACC
AATGTGATTGGAGCAGCACTGAAAGCACATGAAAGTAACCCTGGTGCGGAATATAACTTTTGCTATAAACCAACTTCTAC
ATCTGTAAGTTTTGCTCAAACTCGGGGGGCAAGTTTGCTTCGAGCTGGCAGCGCTAATAATGCTGTGGTTGAAGATGGTG
GAGTAGCAGGTTTCTGCGATTTAACAAGTGACTATGGGAGTAATCGTCAAGCGGTAGTTACTCAAGTTGCTGTCAGTATC
CCAACCGATGCCATGGCTGATATTCCGGGTTCAAATCTACCTCGGGACATAAATCTTTCCGAAGGAACCCAACTTCCTAA
AAGCATGCTATCTACGCAACGTATTCGGGTTATTACAACAGCGTTTTTACCTGCTTATGCCTCGACTTCTTTAGAAACTC
TGCAATCTGATTGCTTAAGTACGAGTTCCGCAAAAATTAGTGACAACTTTGATAGTGCATTAACGGATAAGCAAACCCTA
GCTGATTGTTTGGCAAACTATAACGTACCTTTTAGTACTCAAGTTCAAGAATTTAACTATACCAATAAGCTGACTGAAAT
CACGGCACCAGGTTCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A009TDY3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baumannii D1279779

98.897

100

0.989