Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | HIN89_RS07680 | Genome accession | NZ_CP051862 |
| Coordinates | 1625921..1626301 (+) | Length | 126 a.a. |
| NCBI ID | WP_004835297.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii strain Ab-C102 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1620921..1631301
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HIN89_RS07650 (HIN89_07650) | kdsB | 1621824..1622585 (+) | 762 | WP_004835301.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
| HIN89_RS07655 (HIN89_07655) | - | 1622597..1623577 (+) | 981 | WP_004835299.1 | DNA polymerase III, delta' subunit | - |
| HIN89_RS07660 (HIN89_07660) | - | 1623589..1623930 (+) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| HIN89_RS07665 (HIN89_07665) | - | 1623948..1624721 (+) | 774 | WP_000497302.1 | TatD family hydrolase | - |
| HIN89_RS07670 (HIN89_07670) | - | 1624759..1625367 (+) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| HIN89_RS07675 (HIN89_07675) | - | 1625377..1625931 (+) | 555 | WP_000841373.1 | type II secretion system protein | - |
| HIN89_RS07680 (HIN89_07680) | xcpV | 1625921..1626301 (+) | 381 | WP_004835297.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| HIN89_RS07685 (HIN89_07685) | xcpW | 1626301..1627002 (+) | 702 | WP_000594576.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| HIN89_RS07690 (HIN89_07690) | gspK | 1627002..1627961 (+) | 960 | WP_000301465.1 | type II secretion system minor pseudopilin GspK | - |
| HIN89_RS07695 (HIN89_07695) | - | 1628191..1628787 (+) | 597 | WP_000908453.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| HIN89_RS07700 (HIN89_07700) | ung | 1628838..1629551 (+) | 714 | WP_001177530.1 | uracil-DNA glycosylase | - |
| HIN89_RS07705 (HIN89_07705) | - | 1629548..1630672 (+) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| HIN89_RS07710 (HIN89_07710) | tadA | 1630679..1631182 (+) | 504 | WP_001997771.1 | tRNA adenosine(34) deaminase TadA | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13960.23 Da Isoelectric Point: 9.8004
>NTDB_id=441137 HIN89_RS07680 WP_004835297.1 1625921..1626301(+) (xcpV) [Acinetobacter baumannii strain Ab-C102]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMLYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMLYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=441137 HIN89_RS07680 WP_004835297.1 1625921..1626301(+) (xcpV) [Acinetobacter baumannii strain Ab-C102]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCTGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTTGCAGCTGTCGCTTTAACTAA
AGTTGCAATGCTGTACACTCAGTCTACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACACATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
99.206 |
100 |
0.992 |