Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   HIR76_RS13380 Genome accession   NZ_CP051860
Coordinates   2576119..2576454 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis str. 168     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2571119..2581454
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HIR76_RS13360 (HIR76_14245) gcvT 2571711..2572799 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  HIR76_RS13365 (HIR76_14240) hepAA 2573241..2574914 (+) 1674 WP_004398544.1 SNF2-related protein -
  HIR76_RS13370 (HIR76_14235) yqhG 2574935..2575729 (+) 795 WP_003230200.1 YqhG family protein -
  HIR76_RS13375 (HIR76_14230) sinI 2575912..2576085 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  HIR76_RS13380 (HIR76_14225) sinR 2576119..2576454 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  HIR76_RS13385 (HIR76_14220) aph(3')-IIIa 2576692..2577486 (-) 795 WP_001096887.1 aminoglycoside O-phosphotransferase APH(3')-IIIa -
  HIR76_RS13390 (HIR76_14215) - 2577579..2578068 (-) 490 Protein_2604 GNAT family N-acetyltransferase -
  HIR76_RS13395 (HIR76_14210) sipW 2578040..2578612 (-) 573 WP_003246088.1 signal peptidase I SipW -
  HIR76_RS13400 (HIR76_14205) tapA 2578596..2579357 (-) 762 WP_004399106.1 amyloid fiber anchoring/assembly protein TapA -
  HIR76_RS13405 (HIR76_14200) yqzG 2579629..2579955 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  HIR76_RS13410 (HIR76_14195) spoIITA 2579997..2580176 (-) 180 WP_003230176.1 YqzE family protein -
  HIR76_RS13415 (HIR76_14190) comGG 2580247..2580621 (-) 375 WP_003230170.1 ComG operon protein ComGG Machinery gene
  HIR76_RS13420 (HIR76_14185) comGF 2580622..2581005 (-) 384 WP_003230168.1 ComG operon protein ComGF Machinery gene
  HIR76_RS13425 (HIR76_14180) comGE 2581031..2581378 (-) 348 WP_003230165.1 ComG operon protein 5 Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=441062 HIR76_RS13380 WP_003226345.1 2576119..2576454(+) (sinR) [Bacillus subtilis subsp. subtilis str. 168]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=441062 HIR76_RS13380 WP_003226345.1 2576119..2576454(+) (sinR) [Bacillus subtilis subsp. subtilis str. 168]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1