Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   IOD14_RS30025 Genome accession   NZ_CP063808
Coordinates   6691784..6692410 (+) Length   208 a.a.
NCBI ID   WP_212672041.1    Uniprot ID   -
Organism   Streptomyces sp. A2-16     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 6686784..6697410
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD14_RS30005 (IOD14_30005) - 6688075..6688737 (-) 663 WP_123987945.1 vitamin K epoxide reductase family protein -
  IOD14_RS30010 (IOD14_30010) - 6688883..6689749 (+) 867 WP_123987946.1 ABC transporter ATP-binding protein -
  IOD14_RS30015 (IOD14_30015) - 6689746..6690591 (+) 846 WP_212672040.1 ABC transporter permease -
  IOD14_RS30020 (IOD14_30020) - 6690549..6691787 (+) 1239 WP_249126101.1 sensor histidine kinase -
  IOD14_RS30025 (IOD14_30025) vraR 6691784..6692410 (+) 627 WP_212672041.1 response regulator transcription factor Regulator
  IOD14_RS30030 (IOD14_30030) - 6692420..6692956 (-) 537 WP_249126102.1 tetratricopeptide repeat protein -
  IOD14_RS30035 (IOD14_30035) hisS 6693302..6694564 (-) 1263 WP_123987949.1 histidine--tRNA ligase -
  IOD14_RS30040 (IOD14_30040) - 6694577..6695290 (-) 714 WP_123987950.1 MBL fold metallo-hydrolase -
  IOD14_RS30045 (IOD14_30045) - 6695471..6696289 (+) 819 WP_123987951.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 22525.02 Da        Isoelectric Point: 5.7987

>NTDB_id=440902 IOD14_RS30025 WP_212672041.1 6691784..6692410(+) (vraR) [Streptomyces sp. A2-16]
MIRIVLADDHPVVREGLRAMLTAEPDLEVVADASSGPQAEALAAELRPDIVLMDLRMPGGSGVESIVRMTEAGLPCRVIV
LTTYETDRDILRAVEAGAAGYLLKDLPRAELAESVRAAARGETVLAPTVAARLVDRLRTRPERPRLSERETAVLRLVAEG
CTNAEIGRRLYIGESTVKTHLLRVFAKLGVDDRTAAVTSAMRHGLLDQ

Nucleotide


Download         Length: 627 bp        

>NTDB_id=440902 IOD14_RS30025 WP_212672041.1 6691784..6692410(+) (vraR) [Streptomyces sp. A2-16]
ATGATCCGGATCGTCCTGGCCGACGACCATCCCGTCGTACGGGAGGGTCTGCGGGCCATGCTGACCGCGGAACCGGACCT
GGAGGTGGTCGCCGACGCGTCCAGCGGACCGCAGGCGGAGGCGCTGGCGGCGGAACTGCGACCCGACATCGTGCTGATGG
ACCTGCGGATGCCGGGTGGCTCGGGCGTCGAGTCGATCGTTCGGATGACGGAGGCCGGCCTGCCCTGCCGGGTGATCGTG
CTGACGACGTACGAGACGGACCGGGACATCCTGCGGGCCGTGGAGGCGGGAGCCGCCGGTTATCTCCTCAAGGACCTTCC
CCGGGCCGAACTGGCGGAGTCGGTGCGGGCCGCCGCGCGCGGCGAGACGGTCCTGGCCCCGACGGTCGCCGCCCGTCTGG
TCGACCGGCTGCGCACCCGGCCGGAACGGCCGCGGCTCTCGGAGCGCGAGACGGCGGTGCTGCGGCTGGTGGCGGAGGGC
TGCACGAACGCGGAGATCGGCCGCAGGCTGTACATCGGCGAGTCGACGGTGAAGACCCATCTGCTGCGCGTCTTCGCCAA
GTTGGGCGTCGACGACCGGACGGCCGCCGTGACCAGCGCCATGCGGCACGGGCTGCTCGACCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(146-200)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

38.835

99.038

0.385
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.385