Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   IOD14_RS02870 Genome accession   NZ_CP063808
Coordinates   602837..604246 (-) Length   469 a.a.
NCBI ID   WP_123990883.1    Uniprot ID   -
Organism   Streptomyces sp. A2-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 597837..609246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IOD14_RS02845 (IOD14_02845) - 597949..598638 (-) 690 WP_123990879.1 hypothetical protein -
  IOD14_RS02850 (IOD14_02850) - 598623..599165 (-) 543 WP_020122536.1 SigE family RNA polymerase sigma factor -
  IOD14_RS02855 (IOD14_02855) - 599401..600336 (-) 936 WP_212669576.1 A/G-specific adenine glycosylase -
  IOD14_RS02860 (IOD14_02860) - 600683..601528 (+) 846 WP_123990881.1 hypothetical protein -
  IOD14_RS02865 (IOD14_02865) disA 601631..602755 (-) 1125 WP_123990882.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  IOD14_RS02870 (IOD14_02870) radA/sms 602837..604246 (-) 1410 WP_123990883.1 DNA repair protein RadA Machinery gene
  IOD14_RS02875 (IOD14_02875) - 604540..606228 (+) 1689 WP_212669577.1 sigma-70 family RNA polymerase sigma factor -
  IOD14_RS02880 (IOD14_02880) - 606692..607447 (-) 756 WP_249126240.1 hypothetical protein -
  IOD14_RS02885 (IOD14_02885) - 607621..608562 (+) 942 WP_123990886.1 Ppx/GppA phosphatase family protein -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49835.91 Da        Isoelectric Point: 7.7223

>NTDB_id=440841 IOD14_RS02870 WP_123990883.1 602837..604246(-) (radA/sms) [Streptomyces sp. A2-16]
MATRTKSAKERPSYRCTECGWQTAKWLGRCPECQAWGTIEEYGAPAVRTTTPGRVTTSAVPIGQVDGRQATARSTGVPEL
DRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKSASDEHRTLYVTGEESASQVRMRADRIRAIDDHLYLAAETDLSAVL
GHLDAVKPSLLILDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMSTLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRDEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRISALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLSEAHRLGFTHALVPGDPGKIPSGMKVLEVADIGDALRVLPRSRRREAPRDEEDRR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=440841 IOD14_RS02870 WP_123990883.1 602837..604246(-) (radA/sms) [Streptomyces sp. A2-16]
ATGGCCACCCGTACGAAGTCCGCCAAGGAGCGCCCGTCCTACCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGATCGAGGAGTACGGCGCGCCCGCGGTGCGTACGACGACACCGGGCC
GCGTCACCACCTCCGCCGTGCCCATCGGCCAGGTCGACGGCCGCCAGGCAACTGCCCGCTCCACCGGCGTGCCCGAGCTG
GACCGGGTGCTCGGCGGCGGTCTCGTGCCCGGCGCCGTGGTGCTCCTCGCGGGCGAGCCCGGCGTCGGCAAGTCCACACT
GCTGCTGGACGTGGCGGCCAAGTCGGCGAGCGACGAGCACCGCACGCTCTATGTGACCGGCGAGGAGTCCGCGAGCCAGG
TCCGGATGCGCGCCGACCGCATCCGCGCGATCGACGACCACCTGTATCTCGCCGCGGAGACCGACCTGTCCGCCGTCCTC
GGCCATCTGGACGCGGTGAAGCCGTCCCTGCTAATCCTCGACTCGGTGCAGACGGTGGCCTCCCCGGAGATCGACGGCGC
CCCCGGCGGCATGGCCCAGGTGCGCGAGGTGGCCGGGGCGCTGATCCGCGCCTCCAAGGAGCGCGGGATGTCCACCCTCC
TTGTGGGCCATGTCACCAAGGACGGCGCGATCGCCGGCCCGCGGCTCCTCGAACACCTCGTGGACGTGGTCCTGAGCTTC
GAGGGCGACCGGCACGCGCGCCTCCGGCTCGTACGGGGCGTCAAGAACCGCTACGGCGCCACCGACGAGGTCGGCTGCTT
CGAGCTGCACGACGAGGGCATCACCGGCCTCGCGGACCCAAGCGGACTTTTCCTGACACGTCGTGACGAACCGGTCCCCG
GCACCTGTCTCACCGTCACCCTGGAGGGCCGCCGCCCCCTGGTGGCCGAGGTGCAGGCGCTCACCGTCGACTCGCAGATC
CCCTCGCCCCGGCGCACCACCTCGGGCCTGGAGACCTCCCGCGTCTCGATGATGCTCGCCGTCCTGGAGCAGCGCGGCCG
GATCAGCGCGCTCGGCAAGCGGGACATCTACTCCGCGACGGTCGGCGGGGTAAAGCTTTCGGAACCTGCCGCGGACCTGG
CGATCGCCCTCGCCCTGGCCTCGGCGGCAAGCGACACCCCGCTGCCCAAGAACCTCGTCGCGATCGGCGAAGTGGGCCTG
GCTGGCGAGGTCAGACGGGTCACGGGCGTCCAGCGCAGGCTCTCCGAAGCACACCGTCTGGGCTTCACGCATGCGCTCGT
ACCGGGCGATCCGGGCAAGATCCCGTCCGGCATGAAGGTCCTGGAAGTCGCGGACATAGGGGACGCCCTGAGGGTCCTTC
CGCGCTCCCGTCGGCGAGAGGCCCCACGGGACGAGGAGGACCGCCGGTAG

Domains

Predicted by InterProScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(78-222)

Subunit ChlI of Mg-chelatase (ChlI)

(369-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

42.605

96.588

0.412
  radA Streptococcus mitis NCTC 12261

42.605

96.588

0.412
  radA Streptococcus mitis SK321

42.605

96.588

0.412
  radA Streptococcus pneumoniae Rx1

42.667

95.949

0.409
  radA Streptococcus pneumoniae TIGR4

42.667

95.949

0.409
  radA Streptococcus pneumoniae D39

42.667

95.949

0.409
  radA Streptococcus pneumoniae R6

42.667

95.949

0.409