Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrA   Type   Machinery gene
Locus tag   IQE94_RS13025 Genome accession   NZ_CP063659
Coordinates   2744723..2747635 (-) Length   970 a.a.
NCBI ID   WP_212721164.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7339     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2739723..2752635
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE94_RS12990 (IQE94_12855) lpxD 2740404..2741438 (+) 1035 WP_212721191.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  IQE94_RS12995 (IQE94_12860) rplT 2741546..2741899 (-) 354 WP_010873349.1 50S ribosomal protein L20 -
  IQE94_RS13000 (IQE94_12865) rpmI 2742040..2742243 (-) 204 WP_028947991.1 50S ribosomal protein L35 -
  IQE94_RS13005 (IQE94_12870) ysxA/radC 2742314..2743045 (-) 732 WP_212721189.1 DNA repair protein RadC Machinery gene
  IQE94_RS13010 (IQE94_12875) - 2743035..2743847 (-) 813 WP_212721187.1 rhodanese-related sulfurtransferase -
  IQE94_RS13020 (IQE94_12885) - 2744212..2744538 (+) 327 WP_212721167.1 hypothetical protein -
  IQE94_RS13025 (IQE94_12890) uvrA 2744723..2747635 (-) 2913 WP_212721164.1 excinuclease ABC subunit UvrA Machinery gene
  IQE94_RS13030 (IQE94_12895) - 2747969..2748328 (+) 360 WP_194016302.1 DUF4870 domain-containing protein -
  IQE94_RS13035 (IQE94_12900) ureG 2748582..2749202 (-) 621 WP_212721162.1 urease accessory protein UreG -
  IQE94_RS13040 (IQE94_12905) rre8 2749496..2750974 (+) 1479 WP_212721161.1 high salinity-induced biofilm formation responseregulaton Rre8 -
  IQE94_RS13045 (IQE94_12910) - 2750925..2752454 (-) 1530 WP_223342094.1 hypothetical protein -

Sequence

Protein


Download         Length: 970 a.a.        Molecular weight: 107467.74 Da        Isoelectric Point: 7.0911

>NTDB_id=440647 IQE94_RS13025 WP_212721164.1 2744723..2747635(-) (uvrA) [Synechocystis sp. PCC 7339]
MPDQNSIRIRGARQHNLKNVDLDLPRDRLIVFTGVSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQLDKPDVDSIE
GLSPAISIDQKSTSHNPRSTVGTVTEIYDYLRLLFGRAGSPHCPHCQRNIAPQTIDQMCDRVMELPEKTKFQILAPVVKG
KKGTHVQLFSSLVSQGFVRVRINGEVRELSDNIELKKNQAHTIEIVIDRLIKKDGLQERLVDSLSTCLKQAEGTAIVDIL
DKPALAALSGGKKDDKETLKAAENGQVYHTELPKEIIFSENFACPEHGAVMDELSPRLFSFNSPYGACPDCHGIGFVRSF
CPDLVIPDPEKPVYAAIAPWSEKDNSYYLSLLYSLGQHFGFELQTPWKKLTQEQKEVVLYGTEEEIWFEGESRYRNKQGY
YRRFAGALNILQKNYDETNSDAIKQKLEKYIINQPCHTCDGKRLKPEALAVKLGQYNINDLTSVPIRQTLERIENLELTP
RQAMIGELALKEIKARLTFLLDVGLDYLTLDRAAMTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLLAT
LERLRDLGNTLIVVEHDEDTIRHADHIVDIGPKAGIHGGEIVCQGNFQTLLKNKRSLTGAYLSGREAIATPEERRNGNGA
KLILKNCTHNNLRGIDVTIPLGKLVCITGVSGSGKSTLINELLHPALQHHLSRQVAFPKNLGEIIGLQAIDKVIVIDQSP
IGRTPRSNPATYTGIFDPIREIFTQTVEAKARGYKPGQFSFNVKGGRCEACAGQGVNVIEMNFLPDVYVQCDVCKGARYN
RETLQVKYKGYSIADVLAMTTEEALTVFENIPRAVNRLQTLVDVGLGYIKLGQPAPTLSGGEAQRVKLASELSRRATGKT
LYLIDEPTTGLSFYDVHHLLNVLQRLVDKGNSVLVIEHNLDVIRCSDWIIDLGPEGGDRGGEIMVTGTPETVAQHPSSYT
GKYLAKVLPS

Nucleotide


Download         Length: 2913 bp        

>NTDB_id=440647 IQE94_RS13025 WP_212721164.1 2744723..2747635(-) (uvrA) [Synechocystis sp. PCC 7339]
ATGCCTGACCAAAACAGCATCCGTATTCGAGGCGCTAGACAACATAACCTAAAAAATGTCGATCTAGACCTGCCCCGCGA
TCGCCTGATTGTGTTTACAGGGGTATCGGGGTCAGGGAAATCTTCTTTGGCGTTTGATACCATCTTTGCGGAGGGGCAAC
GGCGCTATGTGGAGTCCCTGAGTGCCTATGCACGACAGTTTTTGGGACAGTTGGATAAACCGGACGTGGACAGCATTGAG
GGGCTGAGTCCAGCTATTTCCATTGATCAGAAATCCACTTCCCACAATCCCCGCTCTACTGTGGGTACGGTGACGGAAAT
TTACGACTACCTCCGTCTGTTATTTGGCCGGGCCGGTAGTCCCCATTGTCCCCACTGCCAACGGAACATTGCCCCCCAAA
CCATTGACCAAATGTGTGATCGGGTGATGGAGTTGCCCGAAAAAACTAAGTTTCAAATTTTGGCTCCGGTGGTAAAAGGA
AAAAAAGGCACCCATGTGCAACTATTTTCCAGTTTGGTTTCCCAGGGTTTTGTGCGGGTAAGAATTAACGGAGAAGTACG
AGAATTAAGTGACAATATTGAATTGAAAAAAAACCAAGCCCATACCATTGAAATAGTCATTGATCGCCTGATCAAAAAGG
ATGGTTTACAGGAAAGACTGGTGGACTCCCTCAGCACTTGTTTAAAGCAAGCAGAGGGCACGGCCATTGTTGACATCTTA
GACAAGCCAGCCTTGGCTGCGTTAAGTGGGGGTAAAAAAGATGACAAAGAAACATTAAAAGCGGCGGAAAATGGTCAAGT
TTACCACACAGAATTACCCAAGGAAATAATCTTTTCAGAAAACTTTGCTTGCCCGGAACATGGGGCAGTAATGGATGAGC
TTTCCCCCCGTTTATTTTCTTTTAATTCTCCCTACGGTGCTTGTCCTGATTGCCATGGTATTGGCTTTGTGCGCTCCTTT
TGCCCTGATTTGGTCATTCCCGATCCAGAAAAACCCGTCTATGCGGCGATCGCCCCTTGGTCAGAGAAGGATAATTCCTA
TTACTTATCGTTGCTATACAGTTTGGGACAACATTTTGGGTTTGAACTGCAAACCCCTTGGAAAAAATTAACCCAAGAGC
AAAAGGAAGTGGTTTTATACGGTACGGAAGAAGAAATTTGGTTTGAGGGCGAATCTCGATACCGCAACAAACAGGGCTAT
TATCGTCGTTTTGCCGGGGCATTGAATATCCTGCAAAAAAACTATGACGAAACTAACTCCGATGCTATTAAACAAAAATT
AGAAAAATATATTATTAATCAACCCTGCCACACCTGCGACGGCAAAAGATTAAAGCCAGAAGCACTGGCAGTAAAACTAG
GGCAGTACAACATTAATGATTTAACCAGTGTGCCCATCCGCCAGACCCTAGAGCGGATTGAGAACCTAGAGTTGACCCCC
CGACAAGCCATGATTGGGGAGTTGGCTCTCAAGGAAATCAAGGCCCGTTTAACCTTTCTCCTGGATGTCGGTTTAGACTA
CCTGACCCTGGATCGGGCCGCCATGACTTTATCGGGGGGGGAAGCCCAACGGATTCGCCTTGCCACTCAAATTGGTTCCG
GCCTTACTGGGGTTTTATACGTTTTGGACGAACCCAGCATTGGTCTCCATCAACGGGATAATGACCGCCTCCTGGCCACA
CTGGAACGACTGCGGGATTTGGGTAATACCCTGATTGTGGTGGAGCATGATGAAGATACCATCCGCCACGCTGACCATAT
TGTCGATATTGGCCCCAAAGCGGGTATCCACGGCGGCGAAATTGTTTGCCAGGGAAATTTTCAGACCCTATTAAAAAATA
AGCGATCCCTCACCGGGGCTTACCTATCCGGGCGGGAGGCGATCGCCACTCCAGAAGAACGGAGAAACGGCAATGGGGCT
AAGTTGATCCTGAAAAACTGCACCCATAACAACTTACGGGGCATTGATGTCACCATTCCCCTGGGGAAATTGGTATGCAT
TACGGGGGTATCCGGTTCCGGTAAATCCACCCTGATAAATGAACTGCTCCATCCGGCCCTGCAACATCACCTTTCCCGCC
AAGTGGCATTTCCCAAAAATCTGGGGGAAATCATCGGCCTCCAGGCGATCGATAAGGTAATTGTCATTGACCAGTCCCCC
ATTGGCCGCACCCCTCGCTCTAACCCCGCCACCTATACCGGCATTTTTGATCCAATTCGGGAAATTTTCACCCAAACCGT
TGAGGCTAAAGCTAGGGGCTATAAACCAGGACAATTTTCCTTTAACGTCAAAGGAGGCCGCTGTGAAGCCTGTGCCGGGC
AAGGGGTCAATGTGATTGAAATGAACTTTTTGCCCGATGTTTATGTGCAGTGTGACGTATGCAAAGGAGCCAGGTATAAC
CGAGAAACGTTGCAGGTTAAATATAAGGGTTACTCCATTGCGGATGTGTTGGCTATGACCACCGAAGAAGCATTGACAGT
GTTTGAGAATATTCCTAGGGCGGTGAATCGTCTGCAAACTTTGGTGGATGTGGGGTTGGGCTATATCAAACTAGGTCAAC
CGGCCCCCACTCTATCCGGGGGGGAAGCCCAACGGGTCAAACTAGCTTCGGAATTATCCCGCCGGGCCACGGGCAAAACT
TTGTATCTGATTGATGAACCCACCACAGGACTATCTTTTTACGACGTGCACCATTTACTGAATGTGTTGCAACGCTTGGT
AGATAAAGGCAATTCCGTTTTAGTCATTGAACATAACCTCGATGTAATCCGTTGCAGTGATTGGATTATTGATCTGGGCC
CCGAAGGTGGTGATCGGGGAGGAGAAATTATGGTAACGGGAACACCGGAAACTGTGGCCCAACATCCTAGTTCTTACACA
GGAAAGTATCTAGCTAAGGTATTGCCGTCCTAA

Domains

Predicted by InterProScan.

UvrA interaction domain (UvrA_inter)

(133-240)

UvrA DNA-binding domain (UvrA_DNA-bind)

(322-429)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrA Streptococcus pneumoniae R6

53.623

99.588

0.534
  uvrA Streptococcus pneumoniae TIGR4

53.623

99.588

0.534
  uvrA Streptococcus pneumoniae D39

53.623

99.588

0.534