Detailed information    

insolico Bioinformatically predicted

Overview

Name   ysxA/radC   Type   Machinery gene
Locus tag   IQE94_RS13005 Genome accession   NZ_CP063659
Coordinates   2742314..2743045 (-) Length   243 a.a.
NCBI ID   WP_212721189.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 7339     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2737314..2748045
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQE94_RS12980 (IQE94_12845) secD 2737849..2739264 (+) 1416 WP_212721195.1 protein translocase subunit SecD -
  IQE94_RS12985 (IQE94_12850) secF 2739320..2740267 (+) 948 WP_212721193.1 protein translocase subunit SecF -
  IQE94_RS12990 (IQE94_12855) lpxD 2740404..2741438 (+) 1035 WP_212721191.1 UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase -
  IQE94_RS12995 (IQE94_12860) rplT 2741546..2741899 (-) 354 WP_010873349.1 50S ribosomal protein L20 -
  IQE94_RS13000 (IQE94_12865) rpmI 2742040..2742243 (-) 204 WP_028947991.1 50S ribosomal protein L35 -
  IQE94_RS13005 (IQE94_12870) ysxA/radC 2742314..2743045 (-) 732 WP_212721189.1 DNA repair protein RadC Machinery gene
  IQE94_RS13010 (IQE94_12875) - 2743035..2743847 (-) 813 WP_212721187.1 rhodanese-related sulfurtransferase -
  IQE94_RS13020 (IQE94_12885) - 2744212..2744538 (+) 327 WP_212721167.1 hypothetical protein -
  IQE94_RS13025 (IQE94_12890) uvrA 2744723..2747635 (-) 2913 WP_212721164.1 excinuclease ABC subunit UvrA Machinery gene

Sequence

Protein


Download         Length: 243 a.a.        Molecular weight: 26925.22 Da        Isoelectric Point: 7.2360

>NTDB_id=440646 IQE94_RS13005 WP_212721189.1 2742314..2743045(-) (ysxA/radC) [Synechocystis sp. PCC 7339]
MSYSLRIADLPEDERPREKLLKYGAKHLGNAELIAILLATGQGKGKLSAVGLGQYILQQLAQNRQDPMDVLRNIHPQELI
AFPGIGPAKATTILAAVELGKRVFQSRPLEKMVVDSPEAAAIALSQDLMWQTQEHFAIVMLDVKNRLLATKVITIGTATE
TLVHPREIFREVIKQGATRLIVAHNHPSGGLDPSPEDIRLTELLLQGAQYLQIPVLDHLILGHGKHQSLRQCTDLWERFP
QGD

Nucleotide


Download         Length: 732 bp        

>NTDB_id=440646 IQE94_RS13005 WP_212721189.1 2742314..2743045(-) (ysxA/radC) [Synechocystis sp. PCC 7339]
ATGAGCTATAGCCTGAGAATTGCCGATCTGCCGGAGGATGAACGCCCCAGGGAAAAATTGCTCAAATATGGGGCTAAGCA
TCTGGGCAATGCAGAATTGATTGCCATTCTATTAGCCACGGGTCAGGGTAAAGGTAAGCTGTCGGCGGTGGGGCTAGGGC
AATATATCCTGCAACAGTTGGCACAAAATCGTCAGGATCCCATGGATGTGTTGCGTAATATCCATCCCCAGGAATTAATT
GCTTTTCCTGGCATTGGCCCCGCCAAGGCCACCACAATTTTAGCGGCGGTGGAATTGGGTAAACGGGTGTTTCAAAGTCG
TCCCCTGGAAAAAATGGTGGTTGATAGCCCCGAAGCGGCGGCGATCGCCTTGAGCCAGGATTTGATGTGGCAGACCCAGG
AACATTTTGCCATTGTCATGCTGGACGTAAAAAACCGCTTGCTAGCCACCAAAGTGATCACCATTGGCACCGCCACGGAG
ACCCTAGTTCACCCCAGGGAAATTTTTCGGGAGGTGATTAAACAGGGTGCCACTAGGCTGATTGTGGCCCATAATCATCC
CTCCGGTGGGCTAGATCCGAGCCCAGAAGATATCCGGCTGACAGAATTGCTGCTCCAGGGGGCCCAATACTTGCAAATTC
CGGTATTGGATCATCTCATTTTGGGCCACGGCAAGCACCAGAGTTTACGGCAATGCACAGATTTGTGGGAACGCTTTCCC
CAGGGAGATTAG

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(7-91)

RadC-like JAB domain (RadC)

(115-231)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

40.969

93.416

0.383