Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   M013TW_RS07995 Genome accession   NC_016928
Coordinates   1630765..1631211 (-) Length   148 a.a.
NCBI ID   WP_001796473.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus M013     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1625765..1636211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M013TW_RS07965 (M013TW_1551) gcvPA 1626691..1628037 (-) 1347 WP_000019687.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  M013TW_RS07970 (M013TW_1552) gcvT 1628057..1629148 (-) 1092 WP_000093349.1 glycine cleavage system aminomethyltransferase GcvT -
  M013TW_RS07975 (M013TW_1553) - 1629307..1629831 (-) 525 WP_001015116.1 shikimate kinase -
  M013TW_RS07980 (M013TW_03430) - 1629821..1629967 (-) 147 WP_001789879.1 hypothetical protein -
  M013TW_RS07985 (M013TW_1554) comGF 1630064..1630561 (-) 498 WP_001838632.1 competence type IV pilus minor pilin ComGF Machinery gene
  M013TW_RS07990 (M013TW_1555) comGE 1630479..1630778 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  M013TW_RS07995 (M013TW_1556) comGD 1630765..1631211 (-) 447 WP_001796473.1 competence type IV pilus minor pilin ComGD Machinery gene
  M013TW_RS08000 (M013TW_1557) comGC 1631189..1631500 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  M013TW_RS08005 (M013TW_1558) comGB 1631514..1632584 (-) 1071 WP_000776407.1 competence type IV pilus assembly protein ComGB Machinery gene
  M013TW_RS08010 (M013TW_1559) comGA 1632556..1633530 (-) 975 WP_000697218.1 competence type IV pilus ATPase ComGA Machinery gene
  M013TW_RS08015 (M013TW_1560) - 1633582..1634205 (-) 624 WP_001223008.1 MBL fold metallo-hydrolase -
  M013TW_RS08020 (M013TW_1561) - 1634202..1634531 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  M013TW_RS08025 (M013TW_1562) - 1634531..1635517 (-) 987 WP_000161308.1 ROK family glucokinase -
  M013TW_RS08030 (M013TW_1563) - 1635514..1635717 (-) 204 WP_000087561.1 YqgQ family protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 17131.31 Da        Isoelectric Point: 10.3312

>NTDB_id=44043 M013TW_RS07995 WP_001796473.1 1630765..1631211(-) (comGD) [Staphylococcus aureus subsp. aureus M013]
MEKQLQIRKQSAFTMIEMLVVMMLISIFLLLTMTSKGLSNLRVIDDEANIISLITELNYIKSQAIANQGYINVRFYENSD
TIKVIENNKIRFLKLKVGKIINVAKVDIIAFDKKGNINKFGSITIDNNNSIYRIIFHIEKGRIRYEKL

Nucleotide


Download         Length: 447 bp        

>NTDB_id=44043 M013TW_RS07995 WP_001796473.1 1630765..1631211(-) (comGD) [Staphylococcus aureus subsp. aureus M013]
ATGGAGAAGCAGTTGCAAATTAGAAAGCAGTCAGCATTTACTATGATTGAGATGCTTGTGGTAATGATGTTAATCAGTAT
ATTTTTACTTTTGACAATGACATCTAAAGGATTAAGCAATCTTAGAGTAATAGATGATGAGGCAAATATCATTTCTCTTA
TTACTGAATTGAATTATATTAAGTCGCAAGCTATAGCAAATCAAGGATATATCAATGTTAGATTTTATGAAAACAGTGAC
ACTATTAAAGTAATAGAGAATAATAAAATACGATTTCTAAAATTAAAAGTAGGCAAAATAATTAATGTTGCAAAAGTTGA
TATTATTGCCTTTGATAAAAAAGGGAATATCAATAAATTTGGTAGCATAACAATTGATAATAACAATTCAATTTATAGAA
TAATATTCCATATTGAAAAAGGAAGAATTCGTTATGAAAAGCTATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Staphylococcus aureus MW2

99.324

100

0.993
  comGD Staphylococcus aureus N315

99.324

100

0.993

Multiple sequence alignment