Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   HH213_RS06770 Genome accession   NZ_CP051684
Coordinates   1457926..1459371 (-) Length   481 a.a.
NCBI ID   WP_169111631.1    Uniprot ID   -
Organism   Duganella dendranthematis strain AF9R3     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1452926..1464371
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH213_RS06755 (HH213_06755) - 1453000..1454109 (-) 1110 WP_110845188.1 ribonucleotide-diphosphate reductase subunit beta -
  HH213_RS06760 (HH213_06760) - 1454174..1457110 (-) 2937 WP_110845189.1 ribonucleoside-diphosphate reductase subunit alpha -
  HH213_RS06765 (HH213_06765) ampD 1457333..1457929 (-) 597 WP_169111628.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  HH213_RS06770 (HH213_06770) pilR 1457926..1459371 (-) 1446 WP_169111631.1 sigma-54 dependent transcriptional regulator Regulator
  HH213_RS06775 (HH213_06775) - 1459371..1461068 (-) 1698 WP_169111633.1 PAS domain-containing sensor histidine kinase -
  HH213_RS06780 (HH213_06780) - 1461084..1461380 (-) 297 WP_110845193.1 PP0621 family protein -
  HH213_RS06785 (HH213_06785) - 1461377..1462180 (-) 804 WP_161049814.1 inner membrane protein YpjD -
  HH213_RS06790 (HH213_06790) - 1462203..1462997 (-) 795 WP_174864395.1 ABC transporter ATP-binding protein -
  HH213_RS06795 (HH213_06795) - 1462997..1463824 (-) 828 WP_169111635.1 ABC transporter permease -

Sequence

Protein


Download         Length: 481 a.a.        Molecular weight: 51436.29 Da        Isoelectric Point: 4.8830

>NTDB_id=440429 HH213_RS06770 WP_169111631.1 1457926..1459371(-) (pilR) [Duganella dendranthematis strain AF9R3]
MSAHTPRSPRVLVVDDEADLRELLELTLLKMGLDVDSAATLGEARALLAGTEYQLVLTDMRLPDGLGLELVREIAAACKN
TPVAVVTAFGSADNAVVALKAGAFDYISKPVALDQLRLMVQSALRLNAEPAAGQAPAAAPTASRLRGESAVIQALRAQIA
RLARSMAPIAINGESGSGKELAAREIHAQSSRAAQPFIAVNCGAIPEALMEAEFFGYRKGAFTGAADEREGFFQAANGGT
LMLDEVADLPLAMQVKLLRAIQERRVRKIGATAEEPVDVRIISATHKNLAQCVEQGSFRQDLFYRLNVIELSLPPLRERL
DDLAVLTDAILARLGTFENKVVLGQGVLAALRGYSFPGNVRELENILERALAFADDGVIEVGDLSLKGARMAEAALPLPV
PSAPTAADVAIAPGAPVVTPPLPDALPANLPDYLIQVERDIILRALAQTQFNRTQAAQLLGISFRQLRYQMQKLNIQEPE
A

Nucleotide


Download         Length: 1446 bp        

>NTDB_id=440429 HH213_RS06770 WP_169111631.1 1457926..1459371(-) (pilR) [Duganella dendranthematis strain AF9R3]
ATGAGTGCTCATACGCCACGTTCGCCGCGTGTTCTGGTTGTCGATGACGAGGCCGATCTGCGCGAATTGCTGGAACTGAC
CTTGCTGAAAATGGGGCTGGACGTCGACAGCGCCGCCACCCTGGGCGAAGCGCGCGCGCTGCTGGCCGGCACAGAATACC
AGCTGGTGCTGACCGATATGCGCTTGCCGGACGGCCTCGGGCTGGAGCTGGTGCGCGAGATCGCCGCGGCCTGCAAGAAC
ACGCCGGTGGCGGTGGTGACGGCGTTCGGCAGCGCCGACAACGCGGTGGTGGCGCTGAAAGCCGGCGCCTTCGATTACAT
CTCCAAGCCGGTGGCGCTGGACCAGTTGCGGCTGATGGTGCAGTCGGCGCTGCGGCTGAACGCCGAACCGGCGGCAGGGC
AGGCGCCGGCCGCAGCGCCGACCGCCAGCCGTTTGCGCGGCGAGTCGGCGGTGATCCAGGCGCTGCGCGCGCAGATCGCC
CGGCTGGCGCGCTCGATGGCGCCGATCGCCATCAACGGCGAATCCGGCAGCGGCAAGGAACTGGCGGCGCGCGAAATCCA
CGCGCAAAGTTCGCGGGCGGCGCAGCCGTTCATCGCCGTCAACTGCGGCGCGATTCCGGAAGCGCTGATGGAGGCCGAGT
TTTTCGGCTACCGCAAAGGTGCTTTCACCGGCGCGGCCGACGAGCGCGAAGGCTTCTTCCAGGCCGCCAACGGCGGCACC
TTGATGCTGGACGAAGTGGCCGACTTGCCGCTGGCGATGCAGGTCAAGCTGCTGCGCGCCATCCAGGAGCGGCGCGTGCG
CAAGATCGGCGCCACCGCCGAGGAGCCGGTCGATGTGCGTATTATTAGTGCGACCCACAAAAACCTGGCGCAGTGCGTGG
AGCAGGGCAGCTTCCGCCAGGATCTGTTTTACCGTCTGAACGTGATCGAGCTGAGTCTGCCGCCGCTGCGCGAACGGCTG
GACGACCTCGCCGTGCTGACCGACGCAATCCTCGCCCGGCTCGGCACGTTTGAGAATAAAGTGGTGCTGGGGCAGGGCGT
GCTGGCGGCGTTGCGCGGCTATTCCTTTCCCGGCAATGTGCGCGAACTGGAAAATATCCTGGAGCGGGCGCTGGCCTTTG
CCGACGATGGCGTGATCGAAGTCGGCGACCTGTCGCTGAAAGGCGCGCGCATGGCTGAGGCGGCGCTGCCGCTGCCCGTG
CCGAGCGCACCCACTGCGGCCGACGTGGCCATCGCGCCCGGCGCGCCGGTCGTCACGCCGCCGTTGCCGGACGCGCTGCC
GGCCAACCTGCCCGACTACCTGATCCAGGTCGAGCGCGACATCATCCTGCGGGCGCTGGCGCAGACCCAGTTTAACCGCA
CCCAGGCGGCGCAACTGCTGGGCATCAGCTTCCGCCAGCTGCGCTACCAAATGCAGAAGCTGAATATCCAGGAGCCGGAG
GCGTGA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(436-474)

Response regulator receiver domain (Response_reg)

(11-120)

Sigma-54 interaction domain (Sigma54_activat)

(146-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

53.305

97.505

0.52
  pilR Acinetobacter baumannii strain A118

44.397

98.337

0.437