Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   IQS18_RS14800 Genome accession   NZ_CP063511
Coordinates   3056948..3057604 (+) Length   218 a.a.
NCBI ID   WP_000611335.1    Uniprot ID   Q3Z2T8
Organism   Escherichia coli strain EH08-18-36     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 3051948..3062604
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS18_RS14770 (IQS18_14775) dcyD 3052828..3053814 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  IQS18_RS14775 (IQS18_14780) tcyL 3053829..3054497 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  IQS18_RS14780 (IQS18_14785) tcyN 3054494..3055246 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  IQS18_RS14785 (IQS18_14790) sdiA 3055476..3056198 (+) 723 WP_001154267.1 transcriptional regulator SdiA -
  IQS18_RS14790 (IQS18_14795) yecF 3056265..3056489 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  IQS18_RS14795 (IQS18_14800) yecU 3056476..3056652 (-) 177 WP_000590347.1 protein YecU -
  IQS18_RS24790 - 3056735..3056806 (-) 72 Protein_2905 transcriptional regulator -
  IQS18_RS14800 (IQS18_14805) letA 3056948..3057604 (+) 657 WP_000611335.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  IQS18_RS14805 (IQS18_14810) uvrC 3057601..3059433 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  IQS18_RS14810 (IQS18_14815) pgsA 3059490..3060038 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  IQS18_RS14830 (IQS18_14835) yecA 3060688..3061353 (+) 666 WP_000847902.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23892.65 Da        Isoelectric Point: 6.9614

>NTDB_id=440418 IQS18_RS14800 WP_000611335.1 3056948..3057604(+) (letA) [Escherichia coli strain EH08-18-36]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=440418 IQS18_RS14800 WP_000611335.1 3056948..3057604(+) (letA) [Escherichia coli strain EH08-18-36]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3Z2T8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486