Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IQS18_RS11020 Genome accession   NZ_CP063511
Coordinates   2275511..2276248 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain EH08-18-36     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2270511..2281248
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS18_RS10990 (IQS18_10995) yfiL 2270669..2271034 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  IQS18_RS10995 (IQS18_11000) aroF 2271244..2272314 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IQS18_RS11000 (IQS18_11005) tyrA 2272325..2273446 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IQS18_RS11005 (IQS18_11010) pheA 2273489..2274649 (-) 1161 WP_000200099.1 bifunctional chorismate mutase/prephenate dehydratase -
  IQS18_RS11010 (IQS18_11015) pheL 2274748..2274795 (-) 48 WP_010723158.1 phe operon leader peptide -
  IQS18_RS11015 (IQS18_11020) raiA 2274899..2275240 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IQS18_RS11020 (IQS18_11025) comL 2275511..2276248 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  IQS18_RS11025 (IQS18_11030) rluD 2276383..2277363 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IQS18_RS11030 (IQS18_11035) yfiH 2277360..2278091 (+) 732 WP_001752929.1 purine nucleoside phosphorylase YfiH -
  IQS18_RS11035 (IQS18_11040) clpC 2278221..2280794 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=440404 IQS18_RS11020 WP_000197686.1 2275511..2276248(-) (comL) [Escherichia coli strain EH08-18-36]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=440404 IQS18_RS11020 WP_000197686.1 2275511..2276248(-) (comL) [Escherichia coli strain EH08-18-36]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376