Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   HH196_RS11510 Genome accession   NZ_CP051666
Coordinates   2358309..2359172 (+) Length   287 a.a.
NCBI ID   WP_169452251.1    Uniprot ID   -
Organism   Marinobacterium sp. LSUCC0821     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2353309..2364172
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH196_RS11490 (HH196_11490) - 2353329..2354174 (+) 846 WP_169452247.1 isopenicillin N synthase family oxygenase -
  HH196_RS11495 (HH196_11495) ilvY 2354188..2355069 (-) 882 WP_169452248.1 HTH-type transcriptional activator IlvY -
  HH196_RS11500 (HH196_11500) ilvC 2355216..2356688 (+) 1473 WP_169452249.1 ketol-acid reductoisomerase -
  HH196_RS11505 (HH196_11505) modF 2356787..2358229 (+) 1443 WP_169452250.1 molybdate ABC transporter ATP-binding protein ModF -
  HH196_RS11510 (HH196_11510) pilD 2358309..2359172 (+) 864 WP_169452251.1 A24 family peptidase Machinery gene
  HH196_RS11515 (HH196_11515) pssA 2359227..2359985 (+) 759 WP_169452252.1 CDP-diacylglycerol--serine O-phosphatidyltransferase -

Sequence

Protein


Download         Length: 287 a.a.        Molecular weight: 31588.67 Da        Isoelectric Point: 6.8435

>NTDB_id=440371 HH196_RS11510 WP_169452251.1 2358309..2359172(+) (pilD) [Marinobacterium sp. LSUCC0821]
MTELLTSIEPIFLPLVVVLSLMIGSFLNVVIYRLPLMMERAWRKEAVEYLDQVLGDDEKTPMTLSVPRSACPHCQHSIRW
YENIPLFSYLLILKGRCSSCAKPISLRYPLVELLTASVGGVVAYHFGFSLTAVAALLFSYALIALLYIDADHQLLPDSIT
LPLIWLGLLVNWAGGFVSLDAALWGAVIGYLSLWSVYWLFKLLTGKEGMGYGDFKLLAAIGAWAGIQVMPGVILISSLVG
VVFAVGQSIVGKRDLKSAMPFGPFLAIAGWIMLIWGGQINSWYLSLL

Nucleotide


Download         Length: 864 bp        

>NTDB_id=440371 HH196_RS11510 WP_169452251.1 2358309..2359172(+) (pilD) [Marinobacterium sp. LSUCC0821]
ATGACCGAACTGCTAACTTCAATAGAGCCAATCTTTCTACCATTGGTCGTGGTGCTCTCGTTGATGATCGGTAGTTTTCT
GAATGTCGTGATCTATCGTTTGCCTTTGATGATGGAGCGCGCTTGGCGAAAAGAGGCTGTAGAGTATCTGGATCAAGTTT
TAGGAGATGATGAGAAAACTCCTATGACTCTCTCGGTTCCCCGTTCTGCCTGCCCGCATTGCCAGCACTCAATTCGTTGG
TACGAAAATATTCCCCTCTTCTCTTACCTTTTGATCCTGAAAGGTCGTTGCAGTAGCTGTGCTAAGCCCATCTCACTGCG
TTATCCATTGGTTGAGCTGCTCACTGCGTCTGTTGGTGGAGTTGTGGCGTATCACTTTGGTTTTAGTCTGACAGCAGTAG
CTGCTCTGCTATTCAGCTACGCCCTGATAGCTCTGCTTTATATTGATGCAGACCATCAGCTCTTGCCCGACTCTATAACA
CTGCCACTGATTTGGTTGGGATTGCTGGTTAACTGGGCGGGAGGTTTTGTCTCTTTGGATGCTGCTCTTTGGGGGGCGGT
GATCGGCTACCTTTCACTCTGGTCTGTCTACTGGCTCTTTAAGTTACTCACCGGCAAAGAGGGTATGGGCTACGGCGACT
TCAAGTTACTTGCGGCAATTGGGGCTTGGGCTGGAATCCAAGTGATGCCAGGTGTAATTCTAATCTCATCCCTTGTAGGT
GTGGTTTTCGCAGTTGGTCAATCAATAGTCGGTAAGCGTGACCTTAAATCTGCAATGCCTTTCGGTCCATTTCTAGCGAT
AGCTGGCTGGATAATGTTGATCTGGGGAGGTCAGATCAATTCATGGTATCTCTCGCTTCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(137-244)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

55.435

96.167

0.533
  pilD Vibrio campbellii strain DS40M4

54.71

96.167

0.526
  pilD Neisseria gonorrhoeae MS11

51.673

93.728

0.484
  pilD Acinetobacter nosocomialis M2

50.923

94.425

0.481
  pilD Acinetobacter baumannii D1279779

50.185

94.425

0.474