Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   IQS19_RS17660 Genome accession   NZ_CP063503
Coordinates   3683067..3683804 (+) Length   245 a.a.
NCBI ID   WP_089075289.1    Uniprot ID   -
Organism   Escherichia coli strain EH09-18-41     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3678067..3688804
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  IQS19_RS17645 (IQS19_17650) clpC 3678521..3681094 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  IQS19_RS17650 (IQS19_17655) yfiH 3681224..3681955 (-) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  IQS19_RS17655 (IQS19_17660) rluD 3681952..3682932 (-) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  IQS19_RS17660 (IQS19_17665) comL 3683067..3683804 (+) 738 WP_089075289.1 outer membrane protein assembly factor BamD Machinery gene
  IQS19_RS17665 (IQS19_17670) raiA 3684075..3684416 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  IQS19_RS17670 (IQS19_17675) pheL 3684520..3684567 (+) 48 WP_010723158.1 phe operon leader peptide -
  IQS19_RS17675 (IQS19_17680) pheA 3684666..3685826 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  IQS19_RS17680 (IQS19_17685) tyrA 3685869..3686990 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  IQS19_RS17685 (IQS19_17690) aroF 3687001..3688071 (-) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  IQS19_RS17690 (IQS19_17695) yfiL 3688281..3688646 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27841.45 Da        Isoelectric Point: 6.4874

>NTDB_id=440330 IQS19_RS17660 WP_089075289.1 3683067..3683804(+) (comL) [Escherichia coli strain EH09-18-41]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPIHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=440330 IQS19_RS17660 WP_089075289.1 3683067..3683804(+) (comL) [Escherichia coli strain EH09-18-41]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGATCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376