Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HH202_RS06855 Genome accession   NZ_CP051659
Coordinates   1385083..1385712 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   A0A066SWI0
Organism   Escherichia coli strain 1162C     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1380083..1390712
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HH202_RS06835 (HH202_06765) ycbZ 1380473..1382233 (-) 1761 WP_000156502.1 AAA family ATPase -
  HH202_RS06840 (HH202_06770) matP 1382419..1382871 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  HH202_RS06845 (HH202_06775) ompA 1382947..1383999 (-) 1053 WP_001346420.1 porin OmpA -
  HH202_RS06850 (HH202_06780) sulA 1384355..1384864 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  HH202_RS06855 (HH202_06785) sxy/tfoX 1385083..1385712 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HH202_RS06860 (HH202_06790) yccS 1385675..1387837 (-) 2163 WP_000875041.1 YccS family putative transporter -
  HH202_RS06865 (HH202_06795) yccF 1387847..1388293 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HH202_RS06870 (HH202_06800) helD 1388416..1390470 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=440284 HH202_RS06855 WP_000839151.1 1385083..1385712(+) (sxy/tfoX) [Escherichia coli strain 1162C]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=440284 HH202_RS06855 WP_000839151.1 1385083..1385712(+) (sxy/tfoX) [Escherichia coli strain 1162C]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A066SWI0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995