Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   YYK_RS09670 Genome accession   NC_018526
Coordinates   1966998..1968092 (+) Length   364 a.a.
NCBI ID   WP_012028050.1    Uniprot ID   A0A0H3N2H6
Organism   Streptococcus suis S735     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1961998..1973092
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  YYK_RS09645 (YYK_09420) pgsA 1962516..1963055 (-) 540 WP_012028045.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  YYK_RS09650 (YYK_09425) rodZ 1963065..1963922 (-) 858 WP_012028600.1 cytoskeleton protein RodZ -
  YYK_RS09655 (YYK_09430) yfmH 1964004..1965287 (-) 1284 WP_012775413.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  YYK_RS09660 (YYK_09435) yfmF 1965284..1966537 (-) 1254 WP_012028048.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  YYK_RS09665 yaaA 1966611..1966995 (+) 385 Protein_1837 S4 domain-containing protein YaaA -
  YYK_RS09670 (YYK_09450) recF 1966998..1968092 (+) 1095 WP_012028050.1 DNA replication/repair protein RecF Machinery gene
  YYK_RS09675 (YYK_09455) guaB 1968364..1969845 (-) 1482 WP_012028051.1 IMP dehydrogenase -
  YYK_RS09680 (YYK_09460) trpS 1970077..1971102 (-) 1026 WP_012775414.1 tryptophan--tRNA ligase -
  YYK_RS09685 (YYK_09465) - 1971457..1972329 (+) 873 WP_012775460.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42188.24 Da        Isoelectric Point: 6.9173

>NTDB_id=44024 YYK_RS09670 WP_012028050.1 1966998..1968092(+) (recF) [Streptococcus suis S735]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=44024 YYK_RS09670 WP_012028050.1 1966998..1968092(+) (recF) [Streptococcus suis S735]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N2H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.36

99.176

0.698
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442

Multiple sequence alignment