Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HG715_RS02330 Genome accession   NZ_CP051649
Coordinates   457302..457844 (-) Length   180 a.a.
NCBI ID   WP_056969905.1    Uniprot ID   A0A0D6A0Q8
Organism   Lactobacillus acetotolerans strain LJ49     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 452302..462844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HG715_RS02305 (HG715_02305) - 452522..452722 (-) 201 WP_054681411.1 hypothetical protein -
  HG715_RS02310 (HG715_02310) dnaB 452948..454330 (-) 1383 WP_056969911.1 replicative DNA helicase -
  HG715_RS02315 (HG715_02315) rplI 454369..454824 (-) 456 WP_056969909.1 50S ribosomal protein L9 -
  HG715_RS02320 (HG715_02320) - 454836..456869 (-) 2034 WP_056969907.1 DHH family phosphoesterase -
  HG715_RS02325 (HG715_02325) rpsR 457038..457277 (-) 240 WP_054681409.1 30S ribosomal protein S18 -
  HG715_RS02330 (HG715_02330) ssb 457302..457844 (-) 543 WP_056969905.1 single-stranded DNA-binding protein Machinery gene
  HG715_RS02335 (HG715_02335) rpsF 457889..458185 (-) 297 WP_054681406.1 30S ribosomal protein S6 -
  HG715_RS02340 (HG715_02340) gyrA 458393..460906 (-) 2514 WP_056969903.1 DNA gyrase subunit A -

Sequence

Protein


Download         Length: 180 a.a.        Molecular weight: 19476.13 Da        Isoelectric Point: 4.9713

>NTDB_id=440227 HG715_RS02330 WP_056969905.1 457302..457844(-) (ssb) [Lactobacillus acetotolerans strain LJ49]
MINRAVLVGRLTRDPELRTTTSGISVASFTLAVDRQYTNAQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFALLESRKTREAQSQNGGFTPNNNGNVGTGNAPSTPSSNNSQSNGNTSNNNDNNDSKKDKP
KDPFAGSGDTIDISDDDLPF

Nucleotide


Download         Length: 543 bp        

>NTDB_id=440227 HG715_RS02330 WP_056969905.1 457302..457844(-) (ssb) [Lactobacillus acetotolerans strain LJ49]
ATGATTAATAGAGCTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTACGAGTGGAATCTCAGTTGC
TAGCTTTACGCTTGCCGTTGACCGTCAGTATACTAACGCTCAAGGTGAAAGAGGCGCAGACTTTATCAGCTGTGTGATCT
GGAGAAAGGCTGCGGAGAACTTCTGTAACTTTACTTCAAAGGGATCATTAGTTGGTATTGATGGCCGAATTCAAACTAGA
AGTTATGATAACAAAGATGGGCAGCGAGTTTATGTAACTGAAGTTGTAGTAGACAATTTCGCGTTACTTGAATCACGTAA
AACTCGTGAGGCTCAAAGCCAGAATGGCGGTTTCACTCCAAATAACAATGGGAATGTTGGTACTGGGAATGCACCTAGCA
CGCCAAGTAGCAATAATTCTCAAAGTAATGGAAATACATCAAATAATAATGACAACAATGATAGTAAAAAAGATAAACCT
AAAGATCCATTTGCTGGATCGGGCGATACCATTGACATTTCAGATGATGATCTTCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D6A0Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.773

100

0.611
  ssbA Bacillus subtilis subsp. subtilis str. 168

50.543

100

0.517